RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 CLIC5Q9NZA1 410 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 PACSIN3Q9UKS6 424 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 QSER1Q2KHR3 1735 aa11.65□□□□□ -0.54
SYNE1-237ENST00000539504 A0A088AWK7 358 aa11.65□□□□□ -0.54
SYNE1-237ENST00000539504 PGM3O95394 542 aa11.65□□□□□ -0.54
SYNE1-237ENST00000539504 AP3M2P53677 418 aa11.65□□□□□ -0.54
SYNE1-237ENST00000539504 RAB6CQ53S08 254 aa11.65□□□□□ -0.54
SYNE1-237ENST00000539504 ZNF667Q5HYK9 610 aa11.65□□□□□ -0.54
SYNE1-237ENST00000539504 ABHD15Q6UXT9 468 aa11.65□□□□□ -0.54
SYNE1-237ENST00000539504 FAM172AQ8WUF8 416 aa11.65□□□□□ -0.54
SYNE1-237ENST00000539504 OPTNQ96CV9 577 aa11.65□□□□□ -0.54
SYNE1-237ENST00000539504 ANKRD36BP1Q96IX9 119 aa11.65□□□□□ -0.54
SYNE1-237ENST00000539504 RAB6CQ9H0N0 254 aa11.65□□□□□ -0.54
SYNE1-237ENST00000539504 POPDC2Q9HBU9 364 aa11.65□□□□□ -0.54
SYNE1-237ENST00000539504 IL1RAPL1Q9NZN1 696 aa11.65□□□□□ -0.54
SYNE1-237ENST00000539504 MAFGO15525 162 aa11.65□□□□□ -0.54
SYNE1-237ENST00000539504 ITM2AO43736 263 aa11.65□□□□□ -0.54
SYNE1-237ENST00000539504 KLHL2O95198 593 aa11.65□□□□□ -0.54
SYNE1-237ENST00000539504 IL1BP01584 269 aa11.65□□□□□ -0.54
SYNE1-237ENST00000539504 HMGCRP04035 888 aa11.65□□□□□ -0.54
SYNE1-237ENST00000539504 RAG1P15918 1043 aa11.65□□□□□ -0.54
SYNE1-237ENST00000539504 WASHC5Q12768 1159 aa11.65□□□□□ -0.54
SYNE1-237ENST00000539504 ACAD11Q709F0 780 aa11.65□□□□□ -0.54
SYNE1-237ENST00000539504 XYLT1Q86Y38 959 aa11.65□□□□□ -0.54
SYNE1-237ENST00000539504 CMASQ8NFW8 434 aaPredicted RBP11.65□□□□□ -0.54
SYNE1-237ENST00000539504 PIWIL2Q8TC59 973 aaKnown RBP11.65□□□□□ -0.54
SYNE1-237ENST00000539504 ATP2A3Q93084 1043 aa11.65□□□□□ -0.54
SYNE1-237ENST00000539504 CDHR1Q96JP9 859 aa11.65□□□□□ -0.54
SYNE1-237ENST00000539504 HEXIM2Q96MH2 286 aaKnown RBP11.65□□□□□ -0.54
SYNE1-237ENST00000539504 UBE2OQ9C0C9 1292 aaKnown RBP11.65□□□□□ -0.54
SYNE1-237ENST00000539504 PCDHGC3Q9UN70 934 aa11.65□□□□□ -0.54
SYNE1-237ENST00000539504 G3BP2Q9UN86 482 aaKnown RBP11.65□□□□□ -0.54
SYNE1-237ENST00000539504 CNTNAP1P78357 1384 aa11.65□□□□□ -0.54
SYNE1-237ENST00000539504 APOL1O14791 398 aa11.65□□□□□ -0.55
SYNE1-237ENST00000539504 SLC1A6P48664 564 aa11.65□□□□□ -0.55
SYNE1-237ENST00000539504 DLG1Q12959 904 aa11.65□□□□□ -0.55
SYNE1-237ENST00000539504 FAM47CQ5HY64 1035 aa11.65□□□□□ -0.55
SYNE1-237ENST00000539504 N4BP2L1Q5TBK1 243 aaPredicted RBP11.65□□□□□ -0.55
SYNE1-237ENST00000539504 DPY19L2Q6NUT2 758 aa11.65□□□□□ -0.55
SYNE1-237ENST00000539504 ICA1LQ8NDH6 482 aa11.65□□□□□ -0.55
SYNE1-237ENST00000539504 RXFP2Q8WXD0 754 aa11.65□□□□□ -0.55
SYNE1-237ENST00000539504 HIC2Q96JB3 615 aa11.65□□□□□ -0.55
SYNE1-237ENST00000539504 ETNK2Q9NVF9 386 aa11.65□□□□□ -0.55
SYNE1-237ENST00000539504 RBBP6Q7Z6E9 1792 aaKnown RBP11.65□□□□□ -0.55
SYNE1-237ENST00000539504 CAPSQ13938 189 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 TEX44Q53QW1 395 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 AGR3Q8TD06 166 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 ZNF526Q8TF50 670 aaPredicted RBP11.64□□□□□ -0.55
SYNE1-237ENST00000539504 GCNAQ96QF7 691 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 PEBP4Q96S96 227 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 MRPL4Q9BYD3 311 aaKnown RBP11.64□□□□□ -0.55
SYNE1-237ENST00000539504 PIH1D1Q9NWS0 290 aaKnown RBP11.64□□□□□ -0.55
SYNE1-237ENST00000539504 LOXHD1Q8IVV2 1947 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 TRDMT1O14717 391 aaKnown RBP11.64□□□□□ -0.55
SYNE1-237ENST00000539504 RGS20O76081 388 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 UQCRBP14927 111 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 VCLP18206 1134 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 CCNFP41002 786 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 PRKG1Q13976 671 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 VWA5B1Q5TIE3 1220 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 AAGABQ6PD74 315 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 SATL1Q86VE3 508 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 CAND1Q86VP6 1230 aaKnown RBP11.64□□□□□ -0.55
SYNE1-237ENST00000539504 SPATA24Q86W54 205 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 PDSS2Q86YH6 399 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 HPS6Q86YV9 775 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 MPP5Q8N3R9 675 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 UBR7Q8N806 425 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 GSDMBQ8TAX9 411 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 FNIP1Q8TF40 1166 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 PRPF31Q8WWY3 499 aaKnown RBP11.64□□□□□ -0.55
SYNE1-237ENST00000539504 PNPOQ9NVS9 261 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 TXNDC16Q9P2K2 825 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 SLC17A6Q9P2U8 582 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 DNAJB4Q9UDY4 337 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 ZNF180Q9UJW8 692 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 ADAMTS6Q9UKP5 1117 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 PPME1Q9Y570 386 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 hCG_2014768A0A024R1R8 64 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 SDR42E2A6NKP2 422 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 VWA5AO00534 786 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 PLSCR1O15162 318 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 PYGLP06737 847 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 GPD1P21695 349 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 PDK3Q15120 406 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 XRRA1Q6P2D8 792 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 KYAT3Q6YP21 454 aaKnown RBP11.64□□□□□ -0.55
SYNE1-237ENST00000539504 SDCCAG8Q86SQ7 713 aaPredicted RBP11.64□□□□□ -0.55
SYNE1-237ENST00000539504 UNC5BQ8IZJ1 945 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 TMEM130Q8N3G9 435 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 RNF157Q96PX1 679 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 COMMD3-BMI1R4GMX3 469 aa11.64□□□□□ -0.55
SYNE1-237ENST00000539504 SLC15A5A6NIM6 579 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 OGTO15294 1046 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 BUD23O43709 281 aaKnown RBP11.63□□□□□ -0.55
SYNE1-237ENST00000539504 ADCY3O60266 1144 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 SIN3BO75182 1162 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 CRHR1P34998 444 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 RGS7P49802 495 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 CRADDP78560 199 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms