RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 CCDC58Q4VC31 144 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 FSCBQ5H9T9 825 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 AARS2Q5JTZ9 985 aaKnown RBP12.84□□□□□ -0.35
USP3-203ENST00000538686 CTRB2Q6GPI1 263 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 KIF6Q6ZMV9 814 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 CYP4V2Q6ZWL3 525 aaPredicted RBP12.84□□□□□ -0.35
USP3-203ENST00000538686 HACE1Q8IYU2 909 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 GABPB2Q8TAK5 448 aaPredicted RBP12.84□□□□□ -0.35
USP3-203ENST00000538686 ZNF564Q8TBZ8 553 aaPredicted RBP12.84□□□□□ -0.35
USP3-203ENST00000538686 S100ZQ8WXG8 99 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 APBB2Q92870 758 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 SLC35C1Q96A29 364 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 E2F7Q96AV8 911 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 FAM111AQ96PZ2 611 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 PAFAH2Q99487 392 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 ANKRD60Q9BZ19 345 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 ACSS3Q9H6R3 686 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 AS3MTQ9HBK9 375 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 ALG13Q9NP73 1137 aaKnown RBP12.84□□□□□ -0.35
USP3-203ENST00000538686 CDC14AQ9UNH5 594 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 NUP188Q5SRE5 1749 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 ESYT2A0FGR8 921 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 ARHGEF35A5YM69 484 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 AP3B1O00203 1094 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 FAM155BO75949 473 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 POLR2BP30876 1174 aaKnown RBP12.84□□□□□ -0.35
USP3-203ENST00000538686 GPD2P43304 727 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 TMBIM6P55061 237 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 P2RX3P56373 397 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 TMPRSS15P98073 1019 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 NFATC3Q12968 1075 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 GRIK5Q16478 980 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 CALCRLQ16602 461 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 FAM47CQ5HY64 1035 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 SLC10A5Q5PT55 438 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 CIAPIN1Q6FI81 312 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 TMC5Q6UXY8 1006 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 TOM1L2Q6ZVM7 507 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 FIBCD1Q8N539 461 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 TTC9Q92623 222 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 GPKOWQ92917 476 aaPredicted RBP eCLIP12.84□□□□□ -0.35
USP3-203ENST00000538686 ACDQ96AP0 544 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 ZNF512Q96ME7 567 aaPredicted RBP12.84□□□□□ -0.35
USP3-203ENST00000538686 TMEM79Q9BSE2 394 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 TP63Q9H3D4 680 aaPredicted RBP12.84□□□□□ -0.35
USP3-203ENST00000538686 AVENQ9NQS1 362 aaPredicted RBP12.84□□□□□ -0.35
USP3-203ENST00000538686 VPS28Q9UK41 221 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 CORINQ9Y5Q5 1042 aa12.84□□□□□ -0.35
USP3-203ENST00000538686 SPATA31A1Q5TZJ5 1347 aa12.83□□□□□ -0.36
USP3-203ENST00000538686 PRSS51A0A1B0GVH4 220 aa12.83□□□□□ -0.36
USP3-203ENST00000538686 ZSCAN5BA6NJL1 495 aa12.83□□□□□ -0.36
USP3-203ENST00000538686 E5RJQ4 531 aa12.83□□□□□ -0.36
USP3-203ENST00000538686 FOXD2O60548 495 aaPredicted RBP12.83□□□□□ -0.36
USP3-203ENST00000538686 TSPAN9O75954 239 aa12.83□□□□□ -0.36
USP3-203ENST00000538686 NTRK1P04629 796 aa12.83□□□□□ -0.36
USP3-203ENST00000538686 ZNF26P17031 533 aaPredicted RBP12.83□□□□□ -0.36
USP3-203ENST00000538686 BTDP43251 543 aa12.83□□□□□ -0.36
USP3-203ENST00000538686 OCA2Q04671 838 aa12.83□□□□□ -0.36
USP3-203ENST00000538686 FAAP100Q0VG06 881 aa12.83□□□□□ -0.36
USP3-203ENST00000538686 GALNT1Q10472 559 aaPredicted RBP12.83□□□□□ -0.36
USP3-203ENST00000538686 FGD3Q5JSP0 725 aa12.83□□□□□ -0.36
USP3-203ENST00000538686 PPP1R2P3Q6NXS1 205 aa12.83□□□□□ -0.36
USP3-203ENST00000538686 GALNT18Q6P9A2 607 aa12.83□□□□□ -0.36
USP3-203ENST00000538686 TPH2Q8IWU9 490 aa12.83□□□□□ -0.36
USP3-203ENST00000538686 KBTBD7Q8WVZ9 684 aa12.83□□□□□ -0.36
USP3-203ENST00000538686 ATG4AQ8WYN0 398 aa12.83□□□□□ -0.36
USP3-203ENST00000538686 FBXL18Q96ME1 805 aa12.83□□□□□ -0.36
USP3-203ENST00000538686 MTMR9Q96QG7 549 aa12.83□□□□□ -0.36
USP3-203ENST00000538686 PLA2G12BQ9BX93 195 aa12.83□□□□□ -0.36
USP3-203ENST00000538686 RUBCNLQ9H714 662 aa12.83□□□□□ -0.36
USP3-203ENST00000538686 SLC52A2Q9HAB3 445 aa12.83□□□□□ -0.36
USP3-203ENST00000538686 DDX56Q9NY93 547 aaKnown RBP12.83□□□□□ -0.36
USP3-203ENST00000538686 STMN3Q9NZ72 180 aa12.83□□□□□ -0.36
USP3-203ENST00000538686 C1orf232A0A0U1RR37 186 aa12.82□□□□□ -0.36
USP3-203ENST00000538686 TRIM64A6NGJ6 449 aa12.82□□□□□ -0.36
USP3-203ENST00000538686 EVPLLA8MZ36 301 aa12.82□□□□□ -0.36
USP3-203ENST00000538686 ADAMTS2O95450 1211 aa12.82□□□□□ -0.36
USP3-203ENST00000538686 CYP1A2P05177 515 aa12.82□□□□□ -0.36
USP3-203ENST00000538686 KRT5P13647 590 aa12.82□□□□□ -0.36
USP3-203ENST00000538686 PRKCAP17252 672 aa12.82□□□□□ -0.36
USP3-203ENST00000538686 MAP4P27816 1152 aaKnown RBP12.82□□□□□ -0.36
USP3-203ENST00000538686 ADSSP30520 456 aa12.82□□□□□ -0.36
USP3-203ENST00000538686 ATN1P54259 1190 aaPredicted RBP12.82□□□□□ -0.36
USP3-203ENST00000538686 NIPAL4Q0D2K0 466 aa12.82□□□□□ -0.36
USP3-203ENST00000538686 BST1Q10588 318 aa12.82□□□□□ -0.36
USP3-203ENST00000538686 FLOT2Q14254 428 aa12.82□□□□□ -0.36
USP3-203ENST00000538686 CRY1Q16526 586 aa12.82□□□□□ -0.36
USP3-203ENST00000538686 KNOP1Q1ED39 458 aaKnown RBP12.82□□□□□ -0.36
USP3-203ENST00000538686 TBC1D10BQ4KMP7 808 aaPredicted RBP12.82□□□□□ -0.36
USP3-203ENST00000538686 GJB7Q6PEY0 223 aa12.82□□□□□ -0.36
USP3-203ENST00000538686 GSTA5Q7RTV2 222 aa12.82□□□□□ -0.36
USP3-203ENST00000538686 SPARTQ8N0X7 666 aa12.82□□□□□ -0.36
USP3-203ENST00000538686 C8orf48Q96LL4 319 aa12.82□□□□□ -0.36
USP3-203ENST00000538686 NACC1Q96RE7 527 aa12.82□□□□□ -0.36
USP3-203ENST00000538686 RTKNQ9BST9 563 aa12.82□□□□□ -0.36
USP3-203ENST00000538686 HERC2P3Q9BVR0 1158 aa12.82□□□□□ -0.36
USP3-203ENST00000538686 COPS7BQ9H9Q2 264 aaPredicted RBP12.82□□□□□ -0.36
USP3-203ENST00000538686 CYP4F11Q9HBI6 524 aa12.82□□□□□ -0.36
USP3-203ENST00000538686 CPNE5Q9HCH3 593 aa12.82□□□□□ -0.36
USP3-203ENST00000538686 AASDHPPTQ9NRN7 309 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms