RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 C16orf86Q6ZW13 317 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 ATG9AQ7Z3C6 839 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 BNIPLQ7Z465 357 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 LRRC71Q8N4P6 559 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 KCTD14Q9BQ13 255 aaPredicted RBP10.24□□□□□ -0.77
COL4A6-208ENST00000538570 SCUBE2Q9NQ36 999 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 DDIT4Q9NX09 232 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 DPP3Q9NY33 737 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 TBX20Q9UMR3 447 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 USP42Q9H9J4 1324 aaKnown RBP10.23□□□□□ -0.77
COL4A6-208ENST00000538570 USP31Q70CQ4 1352 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 HMGB3O15347 200 aaKnown RBP10.23□□□□□ -0.77
COL4A6-208ENST00000538570 CPSF4O95639 269 aaKnown RBP10.23□□□□□ -0.77
COL4A6-208ENST00000538570 FAM58BPP0C7Q3 252 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 PURAQ00577 322 aaKnown RBP10.23□□□□□ -0.77
COL4A6-208ENST00000538570 RASA2Q15283 850 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 ZNF544Q6NX49 715 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 CYP4Z2PQ8N1L4 340 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 DPP10Q8N608 796 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 TDRD5Q8NAT2 981 aaKnown RBP10.23□□□□□ -0.77
COL4A6-208ENST00000538570 PPP1R14AQ96A00 147 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 PPP1R10Q96QC0 940 aaKnown RBP10.23□□□□□ -0.77
COL4A6-208ENST00000538570 DCUN1D5Q9BTE7 237 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 CHST12Q9NRB3 414 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 KLHL3Q9UH77 587 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 AXIN1O15169 862 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 GSTM1P09488 218 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 GSTT1P30711 240 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 RFX3P48380 749 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 CCT8P50990 548 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 ZCCHC7Q8N3Z6 543 aaKnown RBP10.23□□□□□ -0.77
COL4A6-208ENST00000538570 ZFRQ96KR1 1074 aaKnown RBP10.23□□□□□ -0.77
COL4A6-208ENST00000538570 REXO4Q9GZR2 422 aaKnown RBP10.23□□□□□ -0.77
COL4A6-208ENST00000538570 TNS3Q68CZ2 1445 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 TRAF2Q12933 501 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 MAN1C1Q9NR34 630 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 COMMD8Q9NX08 183 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 GPRC5DQ9NZD1 345 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 DDX20Q9UHI6 824 aaKnown RBP10.23□□□□□ -0.77
COL4A6-208ENST00000538570 DRG1Q9Y295 367 aaKnown RBP10.23□□□□□ -0.77
COL4A6-208ENST00000538570 DYRK1BQ9Y463 629 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 PCDHB7Q9Y5E2 793 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 MGAT4DA6NG13 374 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 TM9SF1O15321 606 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 HSMCR30P0CW71 290 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 CYP2C9P11712 490 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 RARGP13631 454 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 IRGCQ6NXR0 463 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 ZBTB49Q6ZSB9 765 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 SERHL2Q9H4I8 314 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 SERHLQ9NQF3 203 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 TFR2Q9UP52 801 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 TELO2Q9Y4R8 837 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 RRN3P2A6NIE6 340 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 F5H5T6 163 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 BTN3A3O00478 584 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 SGPL1O95470 568 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 ASS1P00966 412 aaKnown RBP10.23□□□□□ -0.77
COL4A6-208ENST00000538570 RBP1P09455 135 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 GLRBP48167 497 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 RAD23AP54725 363 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 OLR1P78380 273 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 ITGA9Q13797 1035 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 WDR93Q6P2C0 686 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 FOXR1Q6PIV2 292 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 ATG16L2Q8NAA4 619 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 NAT9Q9BTE0 207 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 HDHD2Q9H0R4 259 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 C17orf75Q9HAS0 396 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 CYP4F12Q9HCS2 524 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 AGPAT3Q9NRZ7 376 aa10.23□□□□□ -0.77
COL4A6-208ENST00000538570 ZNF862O60290 1169 aa10.22□□□□□ -0.77
COL4A6-208ENST00000538570 PON1P27169 355 aa10.22□□□□□ -0.77
COL4A6-208ENST00000538570 MAGEA10P43363 369 aaPredicted RBP10.22□□□□□ -0.77
COL4A6-208ENST00000538570 WASHC2DQ5SRD0 308 aa10.22□□□□□ -0.77
COL4A6-208ENST00000538570 ARMC4Q5T2S8 1044 aa10.22□□□□□ -0.77
COL4A6-208ENST00000538570 SNX30Q5VWJ9 437 aa10.22□□□□□ -0.77
COL4A6-208ENST00000538570 MTDHQ86UE4 582 aaKnown RBP10.22□□□□□ -0.77
COL4A6-208ENST00000538570 EZH1Q92800 747 aaPredicted RBP10.22□□□□□ -0.77
COL4A6-208ENST00000538570 PAFAH2Q99487 392 aa10.22□□□□□ -0.77
COL4A6-208ENST00000538570 TMEM79Q9BSE2 394 aa10.22□□□□□ -0.77
COL4A6-208ENST00000538570 ABI2Q9NYB9 513 aaPredicted RBP10.22□□□□□ -0.77
COL4A6-208ENST00000538570 CNTNAP5Q8WYK1 1306 aa10.22□□□□□ -0.77
COL4A6-208ENST00000538570 OVOS2A0A0G2JMS6 1433 aa10.22□□□□□ -0.77
COL4A6-208ENST00000538570 OVOS2A0A0J9YW53 1432 aa10.22□□□□□ -0.77
COL4A6-208ENST00000538570 OVOS2Q6IE36 1432 aa10.22□□□□□ -0.77
COL4A6-208ENST00000538570 GLI2P10070 1586 aa10.22□□□□□ -0.77
COL4A6-208ENST00000538570 DGKDQ16760 1214 aa10.22□□□□□ -0.77
COL4A6-208ENST00000538570 STRIP1Q5VSL9 837 aa10.22□□□□□ -0.77
COL4A6-208ENST00000538570 XRRA1Q6P2D8 792 aa10.22□□□□□ -0.77
COL4A6-208ENST00000538570 VN1R5Q7Z5H4 357 aa10.22□□□□□ -0.77
COL4A6-208ENST00000538570 KRT77Q7Z794 578 aa10.22□□□□□ -0.77
COL4A6-208ENST00000538570 STRA8Q7Z7C7 330 aa10.22□□□□□ -0.77
COL4A6-208ENST00000538570 FAM45AQ8TCE6 357 aa10.22□□□□□ -0.77
COL4A6-208ENST00000538570 GTF3C2Q8WUA4 911 aaPredicted RBP10.22□□□□□ -0.77
COL4A6-208ENST00000538570 ATG4AQ8WYN0 398 aa10.22□□□□□ -0.77
COL4A6-208ENST00000538570 RNFT2Q96EX2 444 aa10.22□□□□□ -0.77
COL4A6-208ENST00000538570 TBATAQ96M53 351 aa10.22□□□□□ -0.77
COL4A6-208ENST00000538570 RPRD1AQ96P16 312 aaPredicted RBP10.22□□□□□ -0.77
COL4A6-208ENST00000538570 PTPN4P29074 926 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms