RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 CYP11A1P05108 521 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 ADRB2P07550 413 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 FAM153BP0C7A2 387 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 PLS3P13797 630 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 CSRP1P21291 193 aaKnown RBP8.69□□□□□ -1.02
NEDD8-207ENST00000533242 SMTNP53814 917 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 FOXC1Q12948 553 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 PDGFRLQ15198 375 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 TAF12Q16514 161 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 FAM153CQ494X1 144 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 TCEAL6Q6IPX3 200 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 SND1Q7KZF4 910 aaKnown RBP eCLIP8.69□□□□□ -1.02
NEDD8-207ENST00000533242 SYT13Q7L8C5 426 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 ZSWIM2Q8NEG5 633 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 FAM71BQ8TC56 605 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 TCEAL3Q969E4 200 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 SENP8Q96LD8 212 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 SPAG5Q96R06 1193 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 SEPT5Q99719 369 aaPredicted RBP8.69□□□□□ -1.02
NEDD8-207ENST00000533242 SMG9Q9H0W8 520 aaKnown RBP8.69□□□□□ -1.02
NEDD8-207ENST00000533242 VIPAS39Q9H9C1 493 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 FAM153AQ9UHL3 310 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 DSEQ9UL01 958 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 TBX20Q9UMR3 447 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 SCN1AP35498 2009 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 H0YCG3 227 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 GIPC1O14908 333 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 FAM13AO94988 1023 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 HAPLN1P10915 354 aaPredicted RBP8.69□□□□□ -1.02
NEDD8-207ENST00000533242 ATF6P18850 670 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 CARSP49589 748 aaKnown RBP8.69□□□□□ -1.02
NEDD8-207ENST00000533242 GALK1P51570 392 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 CYP2J2P51589 502 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 GUCY2FP51841 1108 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 LILRA4P59901 499 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 CREB5Q02930 508 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 SMARCB1Q12824 385 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 ZNF268Q14587 947 aaPredicted RBP8.69□□□□□ -1.02
NEDD8-207ENST00000533242 MGAT5BQ3V5L5 792 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 CCDC181Q5TID7 509 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 ZNF720Q7Z2F6 126 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 CD302Q8IX05 232 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 LRRC57Q8N9N7 239 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 OR10T2Q8NGX3 314 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 KCNN1Q92952 543 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 USP13Q92995 863 aaPredicted RBP8.69□□□□□ -1.02
NEDD8-207ENST00000533242 ACDQ96AP0 544 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 P2RY13Q9BPV8 354 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 ADAM33Q9BZ11 813 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 HAPLN2Q9GZV7 340 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 EBF3Q9H4W6 596 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 STIM2Q9P246 746 aa8.69□□□□□ -1.02
NEDD8-207ENST00000533242 PTPRDP23468 1912 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 CNOT1A5YKK6 2376 aaKnown RBP8.68□□□□□ -1.02
NEDD8-207ENST00000533242 PPEF2O14830 753 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 KHNYNO15037 678 aaKnown RBP8.68□□□□□ -1.02
NEDD8-207ENST00000533242 GFPT2O94808 682 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 F11P03951 625 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 CEACAM1P13688 526 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 ARSAP15289 507 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 AVPR1AP37288 418 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 TNFSF9P41273 254 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 ZNF131P52739 623 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 DLG4P78352 724 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 BFSP1Q12934 665 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 DMC1Q14565 340 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 SLC39A12Q504Y0 691 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 SH3PXD2AQ5TCZ1 1133 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 TRIM68Q6AZZ1 485 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 ALKBH5Q6P6C2 394 aaKnown RBP8.68□□□□□ -1.02
NEDD8-207ENST00000533242 METTL23Q86XA0 190 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 FAM186BQ8IYM0 893 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 CPA6Q8N4T0 437 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 RDH13Q8NBN7 331 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 SPPL2BQ8TCT7 592 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 RPF1Q9H9Y2 349 aaKnown RBP8.68□□□□□ -1.02
NEDD8-207ENST00000533242 PARVGQ9HBI0 331 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 TMEM9BQ9NQ34 198 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 AGPAT3Q9NRZ7 376 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 TDP1Q9NUW8 608 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 PSD3Q9NYI0 1048 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 DERAQ9Y315 318 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 ANAPC1Q9H1A4 1944 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 PLXND1Q9Y4D7 1925 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 CHD6Q8TD26 2715 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 OTOL1A6NHN0 477 aaPredicted RBP8.68□□□□□ -1.02
NEDD8-207ENST00000533242 PIRO00625 290 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 OGTO15294 1046 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 SLC16A3O15427 465 aaKnown RBP8.68□□□□□ -1.02
NEDD8-207ENST00000533242 EPB41P11171 864 aaKnown RBP8.68□□□□□ -1.02
NEDD8-207ENST00000533242 PRKCIP41743 596 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 ACAP1Q15027 740 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 ZSCAN26Q16670 478 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 C9orf57Q5W0N0 161 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 PMS2CLQ68D20 193 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 C8orf74Q6P047 294 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 GBP6Q6ZN66 633 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 TMEM150AQ86TG1 271 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 MON1AQ86VX9 555 aa8.68□□□□□ -1.02
NEDD8-207ENST00000533242 THEM5Q8N1Q8 247 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms