RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 VPS53Q5VIR6 699 aa4.72□□□□□ -1.65
CD44-235ENST00000532339 EPM2AIP1Q7L775 607 aaPredicted RBP4.72□□□□□ -1.65
CD44-235ENST00000532339 CCAR1Q8IX12 1150 aaKnown RBP4.72□□□□□ -1.65
CD44-235ENST00000532339 SEMA6DQ8NFY4 1073 aa4.72□□□□□ -1.65
CD44-235ENST00000532339 KLHDC4Q8TBB5 520 aa4.72□□□□□ -1.65
CD44-235ENST00000532339 BRIX1Q8TDN6 353 aaKnown RBP4.72□□□□□ -1.65
CD44-235ENST00000532339 RAPGEF4Q8WZA2 1011 aa4.72□□□□□ -1.65
CD44-235ENST00000532339 HSPBAP1Q96EW2 488 aa4.72□□□□□ -1.65
CD44-235ENST00000532339 NUP88Q99567 741 aaPredicted RBP4.72□□□□□ -1.65
CD44-235ENST00000532339 PCGF6Q9BYE7 350 aa4.72□□□□□ -1.65
CD44-235ENST00000532339 ARHGEF3Q9NR81 526 aa4.72□□□□□ -1.65
CD44-235ENST00000532339 PNPOQ9NVS9 261 aa4.72□□□□□ -1.65
CD44-235ENST00000532339 GOLGA6AQ9NYA3 693 aa4.72□□□□□ -1.65
CD44-235ENST00000532339 TMOD3Q9NYL9 352 aa4.72□□□□□ -1.65
CD44-235ENST00000532339 FLRT1Q9NZU1 646 aa4.72□□□□□ -1.65
CD44-235ENST00000532339 DKK3Q9UBP4 350 aa4.72□□□□□ -1.65
CD44-235ENST00000532339 COL3A1P02461 1466 aaPredicted RBP4.72□□□□□ -1.65
CD44-235ENST00000532339 MRC1P22897 1456 aa4.72□□□□□ -1.65
CD44-235ENST00000532339 ZNF609O15014 1411 aa4.72□□□□□ -1.65
CD44-235ENST00000532339 VSTM5A8MXK1 200 aa4.71□□□□□ -1.66
CD44-235ENST00000532339 CAND2O75155 1236 aa4.71□□□□□ -1.66
CD44-235ENST00000532339 PEX14O75381 377 aa4.71□□□□□ -1.66
CD44-235ENST00000532339 AHSGP02765 367 aa4.71□□□□□ -1.66
CD44-235ENST00000532339 VCAM1P19320 739 aa4.71□□□□□ -1.66
CD44-235ENST00000532339 ALDH9A1P49189 494 aa4.71□□□□□ -1.66
CD44-235ENST00000532339 SREBF2Q12772 1141 aa4.71□□□□□ -1.66
CD44-235ENST00000532339 HLTFQ14527 1009 aaKnown RBP eCLIP4.71□□□□□ -1.66
CD44-235ENST00000532339 SRSF7Q16629 238 aaKnown RBP eCLIP4.71□□□□□ -1.66
CD44-235ENST00000532339 CCDC157Q569K6 752 aa4.71□□□□□ -1.66
CD44-235ENST00000532339 CEP85Q6P2H3 762 aa4.71□□□□□ -1.66
CD44-235ENST00000532339 TMEM108Q6UXF1 575 aa4.71□□□□□ -1.66
CD44-235ENST00000532339 DTX2Q86UW9 622 aa4.71□□□□□ -1.66
CD44-235ENST00000532339 GLCCI1Q86VQ1 547 aa4.71□□□□□ -1.66
CD44-235ENST00000532339 PPP1R3BQ86XI6 285 aa4.71□□□□□ -1.66
CD44-235ENST00000532339 FAM46DQ8NEK8 389 aa4.71□□□□□ -1.66
CD44-235ENST00000532339 DDB2Q92466 427 aa4.71□□□□□ -1.66
CD44-235ENST00000532339 IP6K1Q92551 441 aa4.71□□□□□ -1.66
CD44-235ENST00000532339 TBC1D5Q92609 795 aa4.71□□□□□ -1.66
CD44-235ENST00000532339 LTV1Q96GA3 475 aaPredicted RBP4.71□□□□□ -1.66
CD44-235ENST00000532339 AIFM3Q96NN9 605 aa4.71□□□□□ -1.66
CD44-235ENST00000532339 C1QTNF7Q9BXJ2 289 aa4.71□□□□□ -1.66
CD44-235ENST00000532339 ARNT2Q9HBZ2 717 aa4.71□□□□□ -1.66
CD44-235ENST00000532339 ANLNQ9NQW6 1124 aa4.71□□□□□ -1.66
CD44-235ENST00000532339 PCDHA1Q9Y5I3 950 aa4.71□□□□□ -1.66
CD44-235ENST00000532339 AFDNP55196 1824 aaKnown RBP4.71□□□□□ -1.66
CD44-235ENST00000532339 CDHR2Q9BYE9 1310 aa4.71□□□□□ -1.66
CD44-235ENST00000532339 ZNF831Q5JPB2 1677 aa4.7□□□□□ -1.66
CD44-235ENST00000532339 ITGB4P16144 1822 aa4.7□□□□□ -1.66
CD44-235ENST00000532339 MON2Q7Z3U7 1717 aa4.7□□□□□ -1.66
CD44-235ENST00000532339 TARM1B6A8C7 271 aa4.7□□□□□ -1.66
CD44-235ENST00000532339 PPM1DO15297 605 aa4.7□□□□□ -1.66
CD44-235ENST00000532339 TLR5O60602 858 aa4.7□□□□□ -1.66
CD44-235ENST00000532339 FAM163BP0C2L3 166 aa4.7□□□□□ -1.66
CD44-235ENST00000532339 U2AF1L5P0DN76 240 aaPredicted RBP4.7□□□□□ -1.66
CD44-235ENST00000532339 PIM1P11309 404 aaPredicted RBP4.7□□□□□ -1.66
CD44-235ENST00000532339 AKAP5P24588 427 aa4.7□□□□□ -1.66
CD44-235ENST00000532339 PCSK6P29122 969 aa4.7□□□□□ -1.66
CD44-235ENST00000532339 ZNF81P51508 661 aa4.7□□□□□ -1.66
CD44-235ENST00000532339 U2AF1Q01081 240 aaKnown RBP eCLIP4.7□□□□□ -1.66
CD44-235ENST00000532339 TFF2Q03403 129 aa4.7□□□□□ -1.66
CD44-235ENST00000532339 EIF2B5Q13144 721 aaKnown RBP4.7□□□□□ -1.66
CD44-235ENST00000532339 BOP1Q14137 746 aaKnown RBP4.7□□□□□ -1.66
CD44-235ENST00000532339 EPHA10Q5JZY3 1008 aa4.7□□□□□ -1.66
CD44-235ENST00000532339 EMC10Q5UCC4 262 aa4.7□□□□□ -1.66
CD44-235ENST00000532339 ICE2Q659A1 982 aa4.7□□□□□ -1.66
CD44-235ENST00000532339 ANKRD16Q6P6B7 361 aa4.7□□□□□ -1.66
CD44-235ENST00000532339 LAYNQ6UX15 382 aa4.7□□□□□ -1.66
CD44-235ENST00000532339 ZNF804AQ7Z570 1209 aa4.7□□□□□ -1.66
CD44-235ENST00000532339 C1QL2Q7Z5L3 287 aa4.7□□□□□ -1.66
CD44-235ENST00000532339 CATIPQ7Z7H3 387 aa4.7□□□□□ -1.66
CD44-235ENST00000532339 DGKHQ86XP1 1220 aa4.7□□□□□ -1.66
CD44-235ENST00000532339 MASTLQ96GX5 879 aa4.7□□□□□ -1.66
CD44-235ENST00000532339 NAF1Q96HR8 494 aaKnown RBP4.7□□□□□ -1.66
CD44-235ENST00000532339 SLC46A1Q96NT5 459 aa4.7□□□□□ -1.66
CD44-235ENST00000532339 SERHLQ9NQF3 203 aa4.7□□□□□ -1.66
CD44-235ENST00000532339 OBP2AQ9NY56 170 aa4.7□□□□□ -1.66
CD44-235ENST00000532339 HESX1Q9UBX0 185 aa4.7□□□□□ -1.66
CD44-235ENST00000532339 CFAP54Q96N23 3096 aa4.7□□□□□ -1.66
CD44-235ENST00000532339 SLX4Q8IY92 1834 aa4.69□□□□□ -1.66
CD44-235ENST00000532339 COL5A3P25940 1745 aaPredicted RBP4.69□□□□□ -1.66
CD44-235ENST00000532339 H3BUI4 141 aa4.69□□□□□ -1.66
CD44-235ENST00000532339 SLC16A3O15427 465 aaKnown RBP4.69□□□□□ -1.66
CD44-235ENST00000532339 JTBO76095 146 aa4.69□□□□□ -1.66
CD44-235ENST00000532339 ONECUT2O95948 504 aa4.69□□□□□ -1.66
CD44-235ENST00000532339 KRT18P05783 430 aaKnown RBP4.69□□□□□ -1.66
CD44-235ENST00000532339 ATXN1LP0C7T5 689 aaKnown RBP4.69□□□□□ -1.66
CD44-235ENST00000532339 JUPP14923 745 aa4.69□□□□□ -1.66
CD44-235ENST00000532339 FOSL2P15408 326 aa4.69□□□□□ -1.66
CD44-235ENST00000532339 LOXL3P58215 753 aa4.69□□□□□ -1.66
CD44-235ENST00000532339 RHBDL3P58872 404 aa4.69□□□□□ -1.66
CD44-235ENST00000532339 FKBP1BP68106 108 aa4.69□□□□□ -1.66
CD44-235ENST00000532339 EXOSC9Q06265 439 aaKnown RBP4.69□□□□□ -1.66
CD44-235ENST00000532339 GTF2H3Q13889 308 aa4.69□□□□□ -1.66
CD44-235ENST00000532339 UBE4AQ14139 1066 aa4.69□□□□□ -1.66
CD44-235ENST00000532339 LONRF3Q496Y0 759 aa4.69□□□□□ -1.66
CD44-235ENST00000532339 MINDY4Q4G0A6 757 aa4.69□□□□□ -1.66
CD44-235ENST00000532339 AMOTQ4VCS5 1084 aa4.69□□□□□ -1.66
CD44-235ENST00000532339 AARS2Q5JTZ9 985 aaKnown RBP4.69□□□□□ -1.66
CD44-235ENST00000532339 DLK2Q6UY11 383 aa4.69□□□□□ -1.66
CD44-235ENST00000532339 SLC29A4Q7RTT9 530 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms