RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 ACTRT3Q9BYD9 372 aa3.39□□□□□ -1.87
CD44-234ENST00000531873 GPR63Q9BZJ6 419 aa3.39□□□□□ -1.87
CD44-234ENST00000531873 ARHGAP39Q9C0H5 1083 aa3.39□□□□□ -1.87
CD44-234ENST00000531873 ZCWPW1Q9H0M4 648 aa3.39□□□□□ -1.87
CD44-234ENST00000531873 TMX4Q9H1E5 349 aaPredicted RBP3.39□□□□□ -1.87
CD44-234ENST00000531873 KCNK9Q9NPC2 374 aa3.39□□□□□ -1.87
CD44-234ENST00000531873 AKIP1Q9NQ31 210 aa3.39□□□□□ -1.87
CD44-234ENST00000531873 INTS13Q9NVM9 706 aa3.39□□□□□ -1.87
CD44-234ENST00000531873 NDUFAF4Q9P032 175 aa3.39□□□□□ -1.87
CD44-234ENST00000531873 PI4KBQ9UBF8 816 aa3.39□□□□□ -1.87
CD44-234ENST00000531873 DKK2Q9UBU2 259 aa3.39□□□□□ -1.87
CD44-234ENST00000531873 USP22Q9UPT9 525 aa3.39□□□□□ -1.87
CD44-234ENST00000531873 RCE1Q9Y256 329 aa3.39□□□□□ -1.87
CD44-234ENST00000531873 DRG1Q9Y295 367 aaKnown RBP3.39□□□□□ -1.87
CD44-234ENST00000531873 DNAJC16Q9Y2G8 782 aa3.39□□□□□ -1.87
CD44-234ENST00000531873 ZBTB1Q9Y2K1 713 aa3.39□□□□□ -1.87
CD44-234ENST00000531873 DERAQ9Y315 318 aa3.39□□□□□ -1.87
CD44-234ENST00000531873 FNDC1Q4ZHG4 1894 aaPredicted RBP3.39□□□□□ -1.87
CD44-234ENST00000531873 TRGV11A0A075B6L2 103 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 GAGE12BA1L429 117 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 VWA3AA6NCI4 1184 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 GAGE12HA6NDE8 117 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 STX16-NPEPL1H3BU86 382 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 M0QYT0 321 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 EXOC5O00471 708 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 STX16O14662 325 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 ZNF623O75123 536 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 CDKL5O76039 1030 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 BAIAP3O94812 1187 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 TFRCP02786 760 aaKnown RBP3.38□□□□□ -1.87
CD44-234ENST00000531873 RHOP08100 348 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 IFIT1P09914 478 aaKnown RBP3.38□□□□□ -1.87
CD44-234ENST00000531873 XBP1P17861 261 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 KRT9P35527 623 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 CLCN2P51788 898 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 RPS6KA2Q15349 733 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 AASDHQ4L235 1098 aaPredicted RBP3.38□□□□□ -1.87
CD44-234ENST00000531873 RABL3Q5HYI8 236 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 FAAH2Q6GMR7 532 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 GRHL2Q6ISB3 625 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 GLB1LQ6UWU2 654 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 DPY19L3Q6ZPD9 716 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 RASGRP2Q7LDG7 609 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 CPEB3Q8NE35 698 aaKnown RBP3.38□□□□□ -1.87
CD44-234ENST00000531873 MYCBPAPQ8TBZ2 947 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 SLC2A12Q8TD20 617 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 SSH3Q8TE77 659 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 HMGB4Q8WW32 186 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 CPT1BQ92523 772 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 LPIN2Q92539 896 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 EDAQ92838 391 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 GLG1Q92896 1179 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 KTI12Q96EK9 354 aaPredicted RBP3.38□□□□□ -1.87
CD44-234ENST00000531873 FAM89AQ96GI7 184 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 REEP2Q9BRK0 252 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 HERC2P3Q9BVR0 1158 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 ALOXE3Q9BYJ1 711 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 KRTAP3-1Q9BYR8 98 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 TPSD1Q9BZJ3 242 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 KLC2Q9H0B6 622 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 SLITRK6Q9H5Y7 841 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 CHODLQ9H9P2 273 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 GALNT9Q9HCQ5 603 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 BLOC1S4Q9NUP1 217 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 NFU1Q9UMS0 254 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 RRP7AQ9Y3A4 280 aaKnown RBP3.38□□□□□ -1.87
CD44-234ENST00000531873 PCDHB7Q9Y5E2 793 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 RPS6KL1Q9Y6S9 549 aa3.38□□□□□ -1.87
CD44-234ENST00000531873 EFCAB8A8MWE9 144 aa3.37□□□□□ -1.87
CD44-234ENST00000531873 VWC2LB2RUY7 222 aa3.37□□□□□ -1.87
CD44-234ENST00000531873 RNASET2O00584 256 aaKnown RBP3.37□□□□□ -1.87
CD44-234ENST00000531873 SPRY2O43597 315 aa3.37□□□□□ -1.87
CD44-234ENST00000531873 LPXNO60711 386 aa3.37□□□□□ -1.87
CD44-234ENST00000531873 FAM20BO75063 409 aa3.37□□□□□ -1.87
CD44-234ENST00000531873 SPDEFO95238 335 aa3.37□□□□□ -1.87
CD44-234ENST00000531873 CSF1P09603 554 aa3.37□□□□□ -1.87
CD44-234ENST00000531873 DRD1P21728 446 aa3.37□□□□□ -1.87
CD44-234ENST00000531873 ACRV1P26436 265 aa3.37□□□□□ -1.87
CD44-234ENST00000531873 ITPKBP27987 946 aa3.37□□□□□ -1.87
CD44-234ENST00000531873 PCSK6P29122 969 aa3.37□□□□□ -1.87
CD44-234ENST00000531873 MCM5P33992 734 aa3.37□□□□□ -1.87
CD44-234ENST00000531873 MCM2P49736 904 aa3.37□□□□□ -1.87
CD44-234ENST00000531873 MTHFSP49914 203 aa3.37□□□□□ -1.87
CD44-234ENST00000531873 EIF4A1P60842 406 aaKnown RBP3.37□□□□□ -1.87
CD44-234ENST00000531873 RESTQ13127 1097 aa3.37□□□□□ -1.87
CD44-234ENST00000531873 EIF2B5Q13144 721 aaKnown RBP3.37□□□□□ -1.87
CD44-234ENST00000531873 KCNJ12Q14500 433 aa3.37□□□□□ -1.87
CD44-234ENST00000531873 CYP1B1Q16678 543 aa3.37□□□□□ -1.87
CD44-234ENST00000531873 NRN1LQ496H8 165 aa3.37□□□□□ -1.87
CD44-234ENST00000531873 ZNF484Q5JVG2 852 aa3.37□□□□□ -1.87
CD44-234ENST00000531873 UBXN11Q5T124 520 aa3.37□□□□□ -1.87
CD44-234ENST00000531873 ATG16L1Q676U5 607 aa3.37□□□□□ -1.87
CD44-234ENST00000531873 CCDC144NLQ6NUI1 221 aa3.37□□□□□ -1.87
CD44-234ENST00000531873 MZT2BQ6NZ67 158 aa3.37□□□□□ -1.87
CD44-234ENST00000531873 C16orf89Q6UX73 402 aa3.37□□□□□ -1.87
CD44-234ENST00000531873 DSTYKQ6XUX3 929 aa3.37□□□□□ -1.87
CD44-234ENST00000531873 DTX2Q86UW9 622 aa3.37□□□□□ -1.87
CD44-234ENST00000531873 CAND1Q86VP6 1230 aaKnown RBP3.37□□□□□ -1.87
CD44-234ENST00000531873 TMPRSS6Q8IU80 811 aa3.37□□□□□ -1.87
CD44-234ENST00000531873 SYNE4Q8N205 404 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms