RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 WDR35Q9P2L0 1181 aa24.88■■□□□ 1.57
CPSF1-202ENST00000527827 SCML2Q9UQR0 700 aa24.88■■□□□ 1.57
CPSF1-202ENST00000527827 NEUROG3Q9Y4Z2 214 aa24.88■■□□□ 1.57
CPSF1-202ENST00000527827 CYP26A1O43174 497 aa24.87■■□□□ 1.57
CPSF1-202ENST00000527827 ZNF217O75362 1048 aa24.87■■□□□ 1.57
CPSF1-202ENST00000527827 ASS1P00966 412 aaKnown RBP24.87■■□□□ 1.57
CPSF1-202ENST00000527827 RPN1P04843 607 aaKnown RBP24.87■■□□□ 1.57
CPSF1-202ENST00000527827 CISD3P0C7P0 127 aa24.87■■□□□ 1.57
CPSF1-202ENST00000527827 ADORA2BP29275 332 aa24.87■■□□□ 1.57
CPSF1-202ENST00000527827 ATXN3P54252 364 aaPredicted RBP24.87■■□□□ 1.57
CPSF1-202ENST00000527827 SIM1P81133 766 aaPredicted RBP24.87■■□□□ 1.57
CPSF1-202ENST00000527827 C1orf220Q5T0J3 134 aa24.87■■□□□ 1.57
CPSF1-202ENST00000527827 CLEC20AQ6ZU45 233 aa24.87■■□□□ 1.57
CPSF1-202ENST00000527827 SV2AQ7L0J3 742 aa24.87■■□□□ 1.57
CPSF1-202ENST00000527827 HDDC3Q8N4P3 179 aa24.87■■□□□ 1.57
CPSF1-202ENST00000527827 OR2I1PQ8NGU4 316 aa24.87■■□□□ 1.57
CPSF1-202ENST00000527827 TAF4BQ92750 862 aa24.87■■□□□ 1.57
CPSF1-202ENST00000527827 KCTD10Q9H3F6 313 aa24.87■■□□□ 1.57
CPSF1-202ENST00000527827 CD93Q9NPY3 652 aa24.87■■□□□ 1.57
CPSF1-202ENST00000527827 LSM7Q9UK45 103 aaKnown RBP24.87■■□□□ 1.57
CPSF1-202ENST00000527827 CYP8B1Q9UNU6 501 aa24.87■■□□□ 1.57
CPSF1-202ENST00000527827 ZFYVE26Q68DK2 2539 aa24.86■■□□□ 1.57
CPSF1-202ENST00000527827 FAM200BP0CF97 657 aa24.86■■□□□ 1.57
CPSF1-202ENST00000527827 SDE2Q6IQ49 451 aa24.86■■□□□ 1.57
CPSF1-202ENST00000527827 RABEPKQ7Z6M1 372 aa24.86■■□□□ 1.57
CPSF1-202ENST00000527827 TMC2Q8TDI7 906 aa24.86■■□□□ 1.57
CPSF1-202ENST00000527827 P2RY11Q96G91 374 aa24.86■■□□□ 1.57
CPSF1-202ENST00000527827 TWNKQ96RR1 684 aa24.86■■□□□ 1.57
CPSF1-202ENST00000527827 HNRNPABQ99729 332 aaKnown RBP24.86■■□□□ 1.57
CPSF1-202ENST00000527827 SLC6A17Q9H1V8 727 aa24.86■■□□□ 1.57
CPSF1-202ENST00000527827 SERTAD1Q9UHV2 236 aa24.86■■□□□ 1.57
CPSF1-202ENST00000527827 KLK13Q9UKR3 277 aa24.86■■□□□ 1.57
CPSF1-202ENST00000527827 RAD54BQ9Y620 910 aa24.86■■□□□ 1.57
CPSF1-202ENST00000527827 PKD1L2Q7Z442 2459 aa24.86■■□□□ 1.57
CPSF1-202ENST00000527827 A0A1W2PQH9 124 aa24.85■■□□□ 1.57
CPSF1-202ENST00000527827 ARHGAP33O14559 1287 aa24.85■■□□□ 1.57
CPSF1-202ENST00000527827 MDM4O15151 490 aa24.85■■□□□ 1.57
CPSF1-202ENST00000527827 OPHN1O60890 802 aa24.85■■□□□ 1.57
CPSF1-202ENST00000527827 ME1P48163 572 aa24.85■■□□□ 1.57
CPSF1-202ENST00000527827 FAM193AP78312 1265 aa24.85■■□□□ 1.57
CPSF1-202ENST00000527827 GOLGA8FQ08AF8 430 aa24.85■■□□□ 1.57
CPSF1-202ENST00000527827 GOLGA8DPQ0D2H9 430 aa24.85■■□□□ 1.57
CPSF1-202ENST00000527827 Q6ZNB5 142 aa24.85■■□□□ 1.57
CPSF1-202ENST00000527827 MINDY1Q8N5J2 469 aa24.85■■□□□ 1.57
CPSF1-202ENST00000527827 TRIML1Q8N9V2 468 aa24.85■■□□□ 1.57
CPSF1-202ENST00000527827 JAKMIP2Q96AA8 810 aa24.85■■□□□ 1.57
CPSF1-202ENST00000527827 HSPA12BQ96MM6 686 aa24.85■■□□□ 1.57
CPSF1-202ENST00000527827 BACH2Q9BYV9 841 aa24.85■■□□□ 1.57
CPSF1-202ENST00000527827 MTPAPQ9NVV4 582 aaKnown RBP eCLIP24.85■■□□□ 1.577e-8■□□□□ 8.9
CPSF1-202ENST00000527827 CACNA2D2Q9NY47 1150 aa24.85■■□□□ 1.57
CPSF1-202ENST00000527827 NUDT5Q9UKK9 219 aa24.85■■□□□ 1.57
CPSF1-202ENST00000527827 MSRB2Q9Y3D2 182 aa24.85■■□□□ 1.57
CPSF1-202ENST00000527827 WDFY3Q8IZQ1 3526 aa24.85■■□□□ 1.57
CPSF1-202ENST00000527827 SRRM3A6NNA2 597 aaPredicted RBP24.84■■□□□ 1.57
CPSF1-202ENST00000527827 ZBTB24O43167 697 aaPredicted RBP24.84■■□□□ 1.57
CPSF1-202ENST00000527827 ACTN4O43707 911 aaKnown RBP24.84■■□□□ 1.57
CPSF1-202ENST00000527827 HLA-DRAP01903 254 aa24.84■■□□□ 1.57
CPSF1-202ENST00000527827 NR3C1P04150 777 aa24.84■■□□□ 1.57
CPSF1-202ENST00000527827 RARGP13631 454 aa24.84■■□□□ 1.57
CPSF1-202ENST00000527827 CD59P13987 128 aa24.84■■□□□ 1.57
CPSF1-202ENST00000527827 ACO1P21399 889 aaKnown RBP24.84■■□□□ 1.57
CPSF1-202ENST00000527827 DGKGP49619 791 aa24.84■■□□□ 1.57
CPSF1-202ENST00000527827 INCA1Q0VD86 236 aa24.84■■□□□ 1.57
CPSF1-202ENST00000527827 KMT5BQ4FZB7 885 aa24.84■■□□□ 1.57
CPSF1-202ENST00000527827 KLHDC10Q6PID8 442 aa24.84■■□□□ 1.57
CPSF1-202ENST00000527827 CEP57L1Q8IYX8 460 aa24.84■■□□□ 1.57
CPSF1-202ENST00000527827 ZNF419Q96HQ0 510 aaPredicted RBP24.84■■□□□ 1.57
CPSF1-202ENST00000527827 MRGPRX1Q96LB2 322 aa24.84■■□□□ 1.57
CPSF1-202ENST00000527827 UTP3Q9NQZ2 479 aaKnown RBP eCLIP24.84■■□□□ 1.572e-8■■■■■ 57.8
CPSF1-202ENST00000527827 EXOC1Q9NV70 894 aa24.84■■□□□ 1.57
CPSF1-202ENST00000527827 FBXO10Q9UK96 956 aa24.84■■□□□ 1.57
CPSF1-202ENST00000527827 PCDHA5Q9Y5H7 936 aa24.84■■□□□ 1.57
CPSF1-202ENST00000527827 A0A1W2PQD8 194 aa24.83■■□□□ 1.57
CPSF1-202ENST00000527827 WASH3PC4AMC7 463 aa24.83■■□□□ 1.57
CPSF1-202ENST00000527827 PDXKO00764 312 aa24.83■■□□□ 1.57
CPSF1-202ENST00000527827 IKBKBO14920 756 aa24.83■■□□□ 1.57
CPSF1-202ENST00000527827 SLFN14P0C7P3 912 aa24.83■■□□□ 1.57
CPSF1-202ENST00000527827 PIK3CAP42336 1068 aa24.83■■□□□ 1.57
CPSF1-202ENST00000527827 PLA2G4AP47712 749 aa24.83■■□□□ 1.57
CPSF1-202ENST00000527827 ZCCHC14Q8WYQ9 949 aaKnown RBP24.83■■□□□ 1.57
CPSF1-202ENST00000527827 BHMTQ93088 406 aa24.83■■□□□ 1.57
CPSF1-202ENST00000527827 CYFIP2Q96F07 1278 aa24.83■■□□□ 1.57
CPSF1-202ENST00000527827 PAGE5Q96GU1 130 aa24.83■■□□□ 1.57
CPSF1-202ENST00000527827 DNAAF2Q9NVR5 837 aaKnown RBP24.83■■□□□ 1.57
CPSF1-202ENST00000527827 PLK2Q9NYY3 685 aa24.83■■□□□ 1.57
CPSF1-202ENST00000527827 DNMT3LQ9UJW3 386 aa24.83■■□□□ 1.57
CPSF1-202ENST00000527827 GFRA2O00451 464 aa24.82■■□□□ 1.56
CPSF1-202ENST00000527827 F13A1P00488 732 aa24.82■■□□□ 1.56
CPSF1-202ENST00000527827 ZSCAN22P10073 491 aaPredicted RBP24.82■■□□□ 1.56
CPSF1-202ENST00000527827 SCD5Q86SK9 330 aa24.82■■□□□ 1.56
CPSF1-202ENST00000527827 APOBEC3GQ9HC16 384 aaKnown RBP24.82■■□□□ 1.56
CPSF1-202ENST00000527827 PNPLA8Q9NP80 782 aa24.82■■□□□ 1.56
CPSF1-202ENST00000527827 DMXL2Q8TDJ6 3036 aa24.81■■□□□ 1.56
CPSF1-202ENST00000527827 GJB3O75712 270 aa24.81■■□□□ 1.56
CPSF1-202ENST00000527827 STC2O76061 302 aa24.81■■□□□ 1.56
CPSF1-202ENST00000527827 SYPP08247 313 aa24.81■■□□□ 1.56
CPSF1-202ENST00000527827 KIF11P52732 1056 aa24.81■■□□□ 1.56
CPSF1-202ENST00000527827 C10orf120Q5SQS8 335 aa24.81■■□□□ 1.56
CPSF1-202ENST00000527827 CEP135Q66GS9 1140 aa24.81■■□□□ 1.56
CPSF1-202ENST00000527827 NT5C1AQ9BXI3 368 aa24.81■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms