RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 C8orf48Q96LL4 319 aa19.69■□□□□ 0.74
VPS28-207ENST00000526977 PGLYRP2Q96PD5 576 aa19.69■□□□□ 0.74
VPS28-207ENST00000526977 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP19.69■□□□□ 0.745e-6■□□□□ 10.2
VPS28-207ENST00000526977 LCHNA4D1U4 455 aa19.69■□□□□ 0.74
VPS28-207ENST00000526977 MTMR11A4FU01 709 aa19.69■□□□□ 0.74
VPS28-207ENST00000526977 C3orf70A6NLC5 250 aaPredicted RBP19.69■□□□□ 0.74
VPS28-207ENST00000526977 TJP3O95049 919 aa19.69■□□□□ 0.74
VPS28-207ENST00000526977 OR1D2P34982 312 aa19.69■□□□□ 0.74
VPS28-207ENST00000526977 SHHQ15465 462 aa19.69■□□□□ 0.74
VPS28-207ENST00000526977 HADHQ16836 314 aaKnown RBP19.69■□□□□ 0.74
VPS28-207ENST00000526977 ODF2Q5BJF6 829 aa19.69■□□□□ 0.74
VPS28-207ENST00000526977 LRIG3Q6UXM1 1119 aa19.69■□□□□ 0.74
VPS28-207ENST00000526977 SCML4Q8N228 414 aa19.69■□□□□ 0.74
VPS28-207ENST00000526977 ATAD1Q8NBU5 361 aa19.69■□□□□ 0.74
VPS28-207ENST00000526977 GRK7Q8WTQ7 553 aa19.69■□□□□ 0.74
VPS28-207ENST00000526977 CLSTN3Q9BQT9 956 aa19.69■□□□□ 0.74
VPS28-207ENST00000526977 ZWILCHQ9H900 591 aa19.69■□□□□ 0.74
VPS28-207ENST00000526977 ZKSCAN7Q9P0L1 754 aaPredicted RBP19.69■□□□□ 0.74
VPS28-207ENST00000526977 NEU2Q9Y3R4 380 aa19.69■□□□□ 0.74
VPS28-207ENST00000526977 hCG_1818297A0A087WSY0 165 aa19.68■□□□□ 0.74
VPS28-207ENST00000526977 LRRD1A4D1F6 860 aa19.68■□□□□ 0.74
VPS28-207ENST00000526977 KRT7P08729 469 aa19.68■□□□□ 0.74
VPS28-207ENST00000526977 ZNF143P52747 638 aaPredicted RBP19.68■□□□□ 0.74
VPS28-207ENST00000526977 ROR1Q01973 937 aa19.68■□□□□ 0.74
VPS28-207ENST00000526977 MTMR3Q13615 1198 aa19.68■□□□□ 0.74
VPS28-207ENST00000526977 TFDP3Q5H9I0 405 aa19.68■□□□□ 0.74
VPS28-207ENST00000526977 TRNP1Q6NT89 227 aa19.68■□□□□ 0.74
VPS28-207ENST00000526977 RNF19BQ6ZMZ0 732 aa19.68■□□□□ 0.74
VPS28-207ENST00000526977 UBLCP1Q8WVY7 318 aaPredicted RBP19.68■□□□□ 0.74
VPS28-207ENST00000526977 KHSRPQ92945 711 aaKnown RBP eCLIP19.68■□□□□ 0.74
VPS28-207ENST00000526977 PIWIL1Q96J94 861 aaKnown RBP19.68■□□□□ 0.74
VPS28-207ENST00000526977 ASNSD1Q9NWL6 643 aa19.68■□□□□ 0.74
VPS28-207ENST00000526977 LZTS1Q9Y250 596 aa19.68■□□□□ 0.74
VPS28-207ENST00000526977 ATP8A1Q9Y2Q0 1164 aa19.68■□□□□ 0.74
VPS28-207ENST00000526977 C2CD4BA6NLJ0 364 aa19.68■□□□□ 0.74
VPS28-207ENST00000526977 IVDP26440 423 aa19.68■□□□□ 0.74
VPS28-207ENST00000526977 ADCY1Q08828 1119 aa19.68■□□□□ 0.74
VPS28-207ENST00000526977 PTK6Q13882 451 aa19.68■□□□□ 0.74
VPS28-207ENST00000526977 TTMPQ5BVD1 217 aa19.68■□□□□ 0.74
VPS28-207ENST00000526977 KCNT1Q5JUK3 1230 aa19.68■□□□□ 0.74
VPS28-207ENST00000526977 TPGS2Q68CL5 300 aa19.68■□□□□ 0.74
VPS28-207ENST00000526977 SCN4BQ8IWT1 228 aa19.68■□□□□ 0.74
VPS28-207ENST00000526977 ZNF461Q8TAF7 563 aa19.68■□□□□ 0.74
VPS28-207ENST00000526977 RXFP2Q8WXD0 754 aa19.68■□□□□ 0.74
VPS28-207ENST00000526977 FNIP2Q9P278 1114 aa19.68■□□□□ 0.74
VPS28-207ENST00000526977 HSFX1Q9UBD0 423 aa19.68■□□□□ 0.74
VPS28-207ENST00000526977 USP3Q9Y6I4 520 aa19.68■□□□□ 0.74
VPS28-207ENST00000526977 WDR27A2RRH5 827 aa19.67■□□□□ 0.74
VPS28-207ENST00000526977 LINC01553A4QN01 128 aa19.67■□□□□ 0.74
VPS28-207ENST00000526977 TP73O15350 636 aa19.67■□□□□ 0.74
VPS28-207ENST00000526977 RNF8O76064 485 aa19.67■□□□□ 0.74
VPS28-207ENST00000526977 ZBED1O96006 694 aa19.67■□□□□ 0.74
VPS28-207ENST00000526977 CTSAP10619 480 aa19.67■□□□□ 0.74
VPS28-207ENST00000526977 PDGFRAP16234 1089 aa19.67■□□□□ 0.74
VPS28-207ENST00000526977 DESP17661 470 aa19.67■□□□□ 0.74
VPS28-207ENST00000526977 RPL17P18621 184 aaKnown RBP19.67■□□□□ 0.74
VPS28-207ENST00000526977 GPD1P21695 349 aa19.67■□□□□ 0.74
VPS28-207ENST00000526977 MIPP30301 263 aa19.67■□□□□ 0.74
VPS28-207ENST00000526977 CTNNB1P35222 781 aa19.67■□□□□ 0.74
VPS28-207ENST00000526977 NDUFV1P49821 464 aa19.67■□□□□ 0.74
VPS28-207ENST00000526977 RABGGTBP53611 331 aa19.67■□□□□ 0.74
VPS28-207ENST00000526977 SMTNL2Q2TAL5 461 aa19.67■□□□□ 0.74
VPS28-207ENST00000526977 PM20D1Q6GTS8 502 aa19.67■□□□□ 0.74
VPS28-207ENST00000526977 CLEC4CQ8WTT0 213 aa19.67■□□□□ 0.74
VPS28-207ENST00000526977 CNPY3Q9BT09 278 aa19.67■□□□□ 0.74
VPS28-207ENST00000526977 ULBP1Q9BZM6 244 aa19.67■□□□□ 0.74
VPS28-207ENST00000526977 ZBP1Q9H171 429 aa19.67■□□□□ 0.74
VPS28-207ENST00000526977 WHRNQ9P202 907 aa19.67■□□□□ 0.74
VPS28-207ENST00000526977 AFF4Q9UHB7 1163 aaKnown RBP19.67■□□□□ 0.74
VPS28-207ENST00000526977 PCSK1NQ9UHG2 260 aa19.67■□□□□ 0.74
VPS28-207ENST00000526977 GOLGA6CA6NDK9 693 aa19.66■□□□□ 0.74
VPS28-207ENST00000526977 TNFRSF10BO14763 440 aa19.66■□□□□ 0.74
VPS28-207ENST00000526977 ABLIM3O94929 683 aa19.66■□□□□ 0.74
VPS28-207ENST00000526977 TRUB2O95900 331 aaKnown RBP19.66■□□□□ 0.74
VPS28-207ENST00000526977 GAS8O95995 478 aa19.66■□□□□ 0.74
VPS28-207ENST00000526977 RB1P06400 928 aa19.66■□□□□ 0.74
VPS28-207ENST00000526977 GOLGA6DP0CG33 693 aa19.66■□□□□ 0.74
VPS28-207ENST00000526977 TUFMP49411 452 aaKnown RBP19.66■□□□□ 0.74
VPS28-207ENST00000526977 YWHAZP63104 245 aaKnown RBP19.66■□□□□ 0.74
VPS28-207ENST00000526977 TAF5Q15542 800 aa19.66■□□□□ 0.74
VPS28-207ENST00000526977 TRIP13Q15645 432 aaPredicted RBP19.66■□□□□ 0.74
VPS28-207ENST00000526977 SPDYCQ5MJ68 293 aa19.66■□□□□ 0.74
VPS28-207ENST00000526977 SH3PXD2AQ5TCZ1 1133 aa19.66■□□□□ 0.74
VPS28-207ENST00000526977 GPRIN1Q7Z2K8 1008 aa19.66■□□□□ 0.74
VPS28-207ENST00000526977 CMASQ8NFW8 434 aaPredicted RBP19.66■□□□□ 0.74
VPS28-207ENST00000526977 OR2W6PQ8NHA6 318 aa19.66■□□□□ 0.74
VPS28-207ENST00000526977 IRGQQ8WZA9 623 aa19.66■□□□□ 0.74
VPS28-207ENST00000526977 CCDC114Q96M63 670 aa19.66■□□□□ 0.74
VPS28-207ENST00000526977 CEP295NLQ96MC4 621 aa19.66■□□□□ 0.74
VPS28-207ENST00000526977 GOLGA6AQ9NYA3 693 aa19.66■□□□□ 0.74
VPS28-207ENST00000526977 PSD3Q9NYI0 1048 aa19.66■□□□□ 0.74
VPS28-207ENST00000526977 ASIC3Q9UHC3 531 aa19.66■□□□□ 0.74
VPS28-207ENST00000526977 NLRC5Q86WI3 1866 aa19.66■□□□□ 0.74
VPS28-207ENST00000526977 C5orf67F2Z3F1 127 aa19.66■□□□□ 0.74
VPS28-207ENST00000526977 ADAM12O43184 909 aa19.66■□□□□ 0.74
VPS28-207ENST00000526977 LIASO43766 372 aa19.66■□□□□ 0.74
VPS28-207ENST00000526977 LILRB3O75022 631 aa19.66■□□□□ 0.74
VPS28-207ENST00000526977 GRAP2O75791 330 aa19.66■□□□□ 0.74
VPS28-207ENST00000526977 HAPLN1P10915 354 aaPredicted RBP19.66■□□□□ 0.74
VPS28-207ENST00000526977 ITIH2P19823 946 aa19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms