RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 CHMP4BQ9H444 224 aaKnown RBP5.33□□□□□ -1.56
CD44-220ENST00000525688 GBA2Q9HCG7 927 aaPredicted RBP5.33□□□□□ -1.56
CD44-220ENST00000525688 AKIP1Q9NQ31 210 aa5.33□□□□□ -1.56
CD44-220ENST00000525688 SMYD2Q9NRG4 433 aa5.33□□□□□ -1.56
CD44-220ENST00000525688 INTS13Q9NVM9 706 aa5.33□□□□□ -1.56
CD44-220ENST00000525688 DKK2Q9UBU2 259 aa5.33□□□□□ -1.56
CD44-220ENST00000525688 GJD2Q9UKL4 321 aa5.33□□□□□ -1.56
CD44-220ENST00000525688 TCAF1Q9Y4C2 921 aa5.33□□□□□ -1.56
CD44-220ENST00000525688 AFG3L2Q9Y4W6 797 aa5.33□□□□□ -1.56
CD44-220ENST00000525688 NOX1Q9Y5S8 564 aa5.33□□□□□ -1.56
CD44-220ENST00000525688 LRRFIP2Q9Y608 721 aaKnown RBP5.33□□□□□ -1.56
CD44-220ENST00000525688 HS3ST4Q9Y661 456 aa5.33□□□□□ -1.56
CD44-220ENST00000525688 PLXNC1O60486 1568 aa5.33□□□□□ -1.56
CD44-220ENST00000525688 A2MP01023 1474 aa5.32□□□□□ -1.56
CD44-220ENST00000525688 PTPRMP28827 1452 aa5.32□□□□□ -1.56
CD44-220ENST00000525688 TCOF1Q13428 1488 aaKnown RBP5.32□□□□□ -1.56
CD44-220ENST00000525688 LOC100996750A0A140TA64 210 aa5.32□□□□□ -1.56
CD44-220ENST00000525688 PCDH17O14917 1159 aa5.32□□□□□ -1.56
CD44-220ENST00000525688 DHHO43323 396 aa5.32□□□□□ -1.56
CD44-220ENST00000525688 TMCC2O75069 709 aa5.32□□□□□ -1.56
CD44-220ENST00000525688 NCR1O76036 304 aa5.32□□□□□ -1.56
CD44-220ENST00000525688 TSPY4P0CV99 314 aa5.32□□□□□ -1.56
CD44-220ENST00000525688 TSPY10P0CW01 314 aa5.32□□□□□ -1.56
CD44-220ENST00000525688 GATA3P23771 443 aa5.32□□□□□ -1.56
CD44-220ENST00000525688 PSMA3P25788 255 aa5.32□□□□□ -1.56
CD44-220ENST00000525688 PRKAR1BP31321 381 aa5.32□□□□□ -1.56
CD44-220ENST00000525688 PDE6CP51160 858 aa5.32□□□□□ -1.56
CD44-220ENST00000525688 ROR1Q01973 937 aa5.32□□□□□ -1.56
CD44-220ENST00000525688 PRKG2Q13237 762 aa5.32□□□□□ -1.56
CD44-220ENST00000525688 EFR3AQ14156 821 aa5.32□□□□□ -1.56
CD44-220ENST00000525688 PRKD1Q15139 912 aaPredicted RBP5.32□□□□□ -1.56
CD44-220ENST00000525688 GEN1Q17RS7 908 aa5.32□□□□□ -1.56
CD44-220ENST00000525688 VPS53Q5VIR6 699 aa5.32□□□□□ -1.56
CD44-220ENST00000525688 ABLIM2Q6H8Q1 611 aa5.32□□□□□ -1.56
CD44-220ENST00000525688 SULT6B1Q6IMI4 303 aa5.32□□□□□ -1.56
CD44-220ENST00000525688 FAM180BQ6P0A1 224 aa5.32□□□□□ -1.56
CD44-220ENST00000525688 MBD3L2Q8NHZ7 208 aaPredicted RBP5.32□□□□□ -1.56
CD44-220ENST00000525688 SPPL3Q8TCT6 385 aa5.32□□□□□ -1.56
CD44-220ENST00000525688 CCDC47Q96A33 483 aaKnown RBP5.32□□□□□ -1.56
CD44-220ENST00000525688 TMEM125Q96AQ2 219 aa5.32□□□□□ -1.56
CD44-220ENST00000525688 ALOXE3Q9BYJ1 711 aa5.32□□□□□ -1.56
CD44-220ENST00000525688 KRTAP4-6Q9BYQ5 205 aa5.32□□□□□ -1.56
CD44-220ENST00000525688 DEF6Q9H4E7 631 aa5.32□□□□□ -1.56
CD44-220ENST00000525688 ZNF768Q9H5H4 540 aaKnown RBP5.32□□□□□ -1.56
CD44-220ENST00000525688 CXorf56Q9H5V9 222 aa5.32□□□□□ -1.56
CD44-220ENST00000525688 UNKLQ9H9P5 680 aaKnown RBP5.32□□□□□ -1.56
CD44-220ENST00000525688 ALG13Q9NP73 1137 aaKnown RBP5.32□□□□□ -1.56
CD44-220ENST00000525688 BLOC1S4Q9NUP1 217 aa5.32□□□□□ -1.56
CD44-220ENST00000525688 NOL12Q9UGY1 213 aaKnown RBP eCLIP5.32□□□□□ -1.56
CD44-220ENST00000525688 SRP68Q9UHB9 627 aaKnown RBP5.32□□□□□ -1.56
CD44-220ENST00000525688 TESMINQ9Y4I5 508 aa5.32□□□□□ -1.56
CD44-220ENST00000525688 MADDQ8WXG6 1647 aa5.32□□□□□ -1.56
CD44-220ENST00000525688 PTPN23Q9H3S7 1636 aa5.32□□□□□ -1.56
CD44-220ENST00000525688 MAST1Q9Y2H9 1570 aa5.32□□□□□ -1.56
CD44-220ENST00000525688 ABCC5O15440 1437 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 DHX29Q7Z478 1369 aaKnown RBP5.31□□□□□ -1.56
CD44-220ENST00000525688 ADM5C9JUS6 153 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 MBD4O95243 580 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 ANXA6P08133 673 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 GLULP15104 373 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 CST5P28325 142 aaPredicted RBP5.31□□□□□ -1.56
CD44-220ENST00000525688 EPHA3P29320 983 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 UQCRC1P31930 480 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 ADD2P35612 726 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 PIK3CAP42336 1068 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 PGDP52209 483 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 PNLIPRP1P54315 467 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 RESTQ13127 1097 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 FHL3Q13643 280 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 R3HDM1Q15032 1099 aaKnown RBP5.31□□□□□ -1.56
CD44-220ENST00000525688 NBPF8Q3BBV2 869 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 TRIM60Q495X7 471 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 FBXO47Q5MNV8 452 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 KIAA1614Q5VZ46 1190 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 KLHL17Q6TDP4 642 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 BRINP3Q76B58 766 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 SNX32Q86XE0 403 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 RASGRP3Q8IV61 690 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 SLC44A2Q8IWA5 706 aaPredicted RBP5.31□□□□□ -1.56
CD44-220ENST00000525688 NRSN1Q8IZ57 195 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 ABRAQ8N0Z2 381 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 LSM14AQ8ND56 463 aaKnown RBP5.31□□□□□ -1.56
CD44-220ENST00000525688 OR1N1Q8NGS0 311 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 ABHD5Q8WTS1 349 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 FAM136AQ96C01 138 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 UBXN10Q96LJ8 280 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 ZSCAN31Q96LW9 406 aaPredicted RBP5.31□□□□□ -1.56
CD44-220ENST00000525688 WDR24Q96S15 920 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 NUDT22Q9BRQ3 303 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 AP1M1Q9BXS5 423 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 PABPC3Q9H361 631 aaKnown RBP5.31□□□□□ -1.56
CD44-220ENST00000525688 SAYSD1Q9NPB0 183 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 PRDM8Q9NQV8 689 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 TBC1D22BQ9NU19 505 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 PDP2Q9P2J9 529 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 SHANK2Q9UPX8 1470 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 ADGBQ8N7X0 1667 aa5.31□□□□□ -1.56
CD44-220ENST00000525688 COL15A1P39059 1388 aa5.3□□□□□ -1.56
CD44-220ENST00000525688 SYNRGQ9UMZ2 1314 aa5.3□□□□□ -1.56
CD44-220ENST00000525688 A0A0G2JLL6 359 aaPredicted RBP5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms