RNA–Protein interactions for RNA: ENST00000519623.1

CSMD1-205, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 4

Gene CSMD1, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-205ENST00000519623 PI4KAP42356 2102 aa13.09□□□□□ -0.31
CSMD1-205ENST00000519623 NEDD8-MDP1E9PL57 170 aa13.09□□□□□ -0.31
CSMD1-205ENST00000519623 CACNG3O60359 315 aa13.09□□□□□ -0.31
CSMD1-205ENST00000519623 STC2O76061 302 aa13.09□□□□□ -0.31
CSMD1-205ENST00000519623 KLKB1P03952 638 aa13.09□□□□□ -0.31
CSMD1-205ENST00000519623 EPB41P11171 864 aaKnown RBP13.09□□□□□ -0.31
CSMD1-205ENST00000519623 TYRP14679 529 aa13.09□□□□□ -0.31
CSMD1-205ENST00000519623 PSEN1P49768 467 aa13.09□□□□□ -0.31
CSMD1-205ENST00000519623 MXI1P50539 228 aa13.09□□□□□ -0.31
CSMD1-205ENST00000519623 PMS1P54277 932 aaKnown RBP13.09□□□□□ -0.31
CSMD1-205ENST00000519623 C10orf120Q5SQS8 335 aa13.09□□□□□ -0.31
CSMD1-205ENST00000519623 C10orf76Q5T2E6 689 aa13.09□□□□□ -0.31
CSMD1-205ENST00000519623 ZNF658Q5TYW1 1059 aaPredicted RBP13.09□□□□□ -0.31
CSMD1-205ENST00000519623 RNF43Q68DV7 783 aa13.09□□□□□ -0.31
CSMD1-205ENST00000519623 ARHGAP17Q68EM7 881 aa13.09□□□□□ -0.31
CSMD1-205ENST00000519623 ANKRD40Q6AI12 368 aa13.09□□□□□ -0.31
CSMD1-205ENST00000519623 TPGS1Q6ZTW0 290 aa13.09□□□□□ -0.31
CSMD1-205ENST00000519623 NUDT18Q6ZVK8 323 aa13.09□□□□□ -0.31
CSMD1-205ENST00000519623 TTC39CQ8N584 583 aa13.09□□□□□ -0.31
CSMD1-205ENST00000519623 ZNF513Q8N8E2 541 aaPredicted RBP13.09□□□□□ -0.31
CSMD1-205ENST00000519623 HMGB4Q8WW32 186 aa13.09□□□□□ -0.31
CSMD1-205ENST00000519623 GSDMAQ96QA5 445 aa13.09□□□□□ -0.31
CSMD1-205ENST00000519623 BBS2Q9BXC9 721 aa13.09□□□□□ -0.31
CSMD1-205ENST00000519623 DNAI2Q9GZS0 605 aa13.09□□□□□ -0.31
CSMD1-205ENST00000519623 FAM124BQ9H5Z6 455 aaPredicted RBP13.09□□□□□ -0.31
CSMD1-205ENST00000519623 CD248Q9HCU0 757 aa13.09□□□□□ -0.31
CSMD1-205ENST00000519623 DNAJC17Q9NVM6 304 aaKnown RBP13.09□□□□□ -0.31
CSMD1-205ENST00000519623 CLIC5Q9NZA1 410 aa13.09□□□□□ -0.31
CSMD1-205ENST00000519623 NAGPAQ9UK23 515 aa13.09□□□□□ -0.31
CSMD1-205ENST00000519623 FBXO10Q9UK96 956 aa13.09□□□□□ -0.31
CSMD1-205ENST00000519623 COQ4Q9Y3A0 265 aa13.09□□□□□ -0.31
CSMD1-205ENST00000519623 GTF3C3Q9Y5Q9 886 aa13.09□□□□□ -0.31
CSMD1-205ENST00000519623 PLXND1Q9Y4D7 1925 aa13.09□□□□□ -0.31
CSMD1-205ENST00000519623 CACNA1BQ00975 2339 aa13.08□□□□□ -0.31
CSMD1-205ENST00000519623 A0A1W2PQF6 199 aa13.08□□□□□ -0.32
CSMD1-205ENST00000519623 TCRBV21S2A2A0A5A6 115 aa13.08□□□□□ -0.32
CSMD1-205ENST00000519623 C4orf47A7E2U8 309 aa13.08□□□□□ -0.32
CSMD1-205ENST00000519623 PATE3B3GLJ2 98 aa13.08□□□□□ -0.32
CSMD1-205ENST00000519623 PRRT4C9JH25 899 aa13.08□□□□□ -0.32
CSMD1-205ENST00000519623 STX10O60499 249 aa13.08□□□□□ -0.32
CSMD1-205ENST00000519623 NTSR1P30989 418 aa13.08□□□□□ -0.32
CSMD1-205ENST00000519623 DHPSP49366 369 aaPredicted RBP13.08□□□□□ -0.32
CSMD1-205ENST00000519623 GOLGA8FQ08AF8 430 aa13.08□□□□□ -0.32
CSMD1-205ENST00000519623 GOLGA8DPQ0D2H9 430 aa13.08□□□□□ -0.32
CSMD1-205ENST00000519623 CBWD6Q4V339 395 aa13.08□□□□□ -0.32
CSMD1-205ENST00000519623 RAB41Q5JT25 222 aa13.08□□□□□ -0.32
CSMD1-205ENST00000519623 CBWD3Q5JTY5 395 aa13.08□□□□□ -0.32
CSMD1-205ENST00000519623 CBWD5Q5RIA9 395 aa13.08□□□□□ -0.32
CSMD1-205ENST00000519623 N4BP2L1Q5TBK1 243 aaPredicted RBP13.08□□□□□ -0.32
CSMD1-205ENST00000519623 GRAMD4Q6IC98 578 aa13.08□□□□□ -0.32
CSMD1-205ENST00000519623 TOGARAM2Q6ZUX3 1019 aa13.08□□□□□ -0.32
CSMD1-205ENST00000519623 TRMT11Q7Z4G4 463 aaKnown RBP13.08□□□□□ -0.32
CSMD1-205ENST00000519623 ANKRD52Q8NB46 1076 aa13.08□□□□□ -0.32
CSMD1-205ENST00000519623 ERCC4Q92889 916 aaPredicted RBP13.08□□□□□ -0.32
CSMD1-205ENST00000519623 CCDC34Q96HJ3 373 aa13.08□□□□□ -0.32
CSMD1-205ENST00000519623 XPO6Q96QU8 1125 aaKnown RBP13.08□□□□□ -0.32
CSMD1-205ENST00000519623 ACOX2Q99424 681 aa13.08□□□□□ -0.32
CSMD1-205ENST00000519623 RMND1Q9NWS8 449 aa13.08□□□□□ -0.32
CSMD1-205ENST00000519623 LSM7Q9UK45 103 aaKnown RBP13.08□□□□□ -0.32
CSMD1-205ENST00000519623 TNRC6BQ9UPQ9 1833 aaKnown RBP13.07□□□□□ -0.32
CSMD1-205ENST00000519623 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.07□□□□□ -0.32
CSMD1-205ENST00000519623 LNP1A1A4G5 178 aa13.07□□□□□ -0.32
CSMD1-205ENST00000519623 CDX4O14627 284 aaPredicted RBP13.07□□□□□ -0.32
CSMD1-205ENST00000519623 KHNYNO15037 678 aaKnown RBP13.07□□□□□ -0.32
CSMD1-205ENST00000519623 SLC16A3O15427 465 aaKnown RBP13.07□□□□□ -0.32
CSMD1-205ENST00000519623 MAP3K13O43283 966 aa13.07□□□□□ -0.32
CSMD1-205ENST00000519623 KCNK5O95279 499 aa13.07□□□□□ -0.32
CSMD1-205ENST00000519623 RALAP11233 206 aa13.07□□□□□ -0.32
CSMD1-205ENST00000519623 GABRG2P18507 467 aa13.07□□□□□ -0.32
CSMD1-205ENST00000519623 WASP42768 502 aa13.07□□□□□ -0.32
CSMD1-205ENST00000519623 PTGER3P43115 390 aa13.07□□□□□ -0.32
CSMD1-205ENST00000519623 IRX4P78413 519 aa13.07□□□□□ -0.32
CSMD1-205ENST00000519623 COG7P83436 770 aa13.07□□□□□ -0.32
CSMD1-205ENST00000519623 FKBP3Q00688 224 aaKnown RBP13.07□□□□□ -0.32
CSMD1-205ENST00000519623 BYSLQ13895 437 aaKnown RBP13.07□□□□□ -0.32
CSMD1-205ENST00000519623 SPDYCQ5MJ68 293 aa13.07□□□□□ -0.32
CSMD1-205ENST00000519623 EGFLAMQ63HQ2 1017 aa13.07□□□□□ -0.32
CSMD1-205ENST00000519623 PM20D1Q6GTS8 502 aa13.07□□□□□ -0.32
CSMD1-205ENST00000519623 LPCAT2Q7L5N7 544 aa13.07□□□□□ -0.32
CSMD1-205ENST00000519623 CYP2U1Q7Z449 544 aa13.07□□□□□ -0.32
CSMD1-205ENST00000519623 TADA2BQ86TJ2 420 aa13.07□□□□□ -0.32
CSMD1-205ENST00000519623 PIGZQ86VD9 579 aa13.07□□□□□ -0.32
CSMD1-205ENST00000519623 TMEFF1Q8IYR6 380 aa13.07□□□□□ -0.32
CSMD1-205ENST00000519623 PGBD3Q8N328 593 aa13.07□□□□□ -0.32
CSMD1-205ENST00000519623 PIGKQ92643 395 aa13.07□□□□□ -0.32
CSMD1-205ENST00000519623 EDEM2Q9BV94 578 aa13.07□□□□□ -0.32
CSMD1-205ENST00000519623 TMEM74BQ9NUR3 256 aa13.07□□□□□ -0.32
CSMD1-205ENST00000519623 BCCIPQ9P287 314 aaKnown RBP eCLIP13.07□□□□□ -0.32
CSMD1-205ENST00000519623 MAP1BP46821 2468 aaKnown RBP13.07□□□□□ -0.32
CSMD1-205ENST00000519623 CEP192Q8TEP8 1941 aa13.07□□□□□ -0.32
CSMD1-205ENST00000519623 ASCC3Q8N3C0 2202 aaKnown RBP13.07□□□□□ -0.32
CSMD1-205ENST00000519623 TULP2O00295 520 aa13.06□□□□□ -0.32
CSMD1-205ENST00000519623 PENKP01210 267 aaPredicted RBP13.06□□□□□ -0.32
CSMD1-205ENST00000519623 HOXB2P14652 356 aa13.06□□□□□ -0.32
CSMD1-205ENST00000519623 DGKGP49619 791 aa13.06□□□□□ -0.32
CSMD1-205ENST00000519623 EFEMP1Q12805 493 aa13.06□□□□□ -0.32
CSMD1-205ENST00000519623 CUL2Q13617 745 aa13.06□□□□□ -0.32
CSMD1-205ENST00000519623 TCERG1LQ5VWI1 586 aa13.06□□□□□ -0.32
CSMD1-205ENST00000519623 FYB2Q5VWT5 728 aa13.06□□□□□ -0.32
CSMD1-205ENST00000519623 KIAA1211LQ6NV74 962 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms