RNA–Protein interactions for RNA: ENST00000513098.5

UBE2D3-231, Transcript of ubiquitin conjugating enzyme E2 D3, human

TSL 3

Gene UBE2D3, Length 702 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE2D3-231	ENST00000513098	NAT16	Q8N8M0	369 aa		13.21	□□□□□ -0.29
UBE2D3-231	ENST00000513098	TERB1	Q8NA31	727 aa		13.21	□□□□□ -0.29
UBE2D3-231	ENST00000513098	TATDN2	Q93075	761 aa		13.21	□□□□□ -0.29
UBE2D3-231	ENST00000513098	EEF2KMT	Q96G04	330 aa		13.21	□□□□□ -0.29
UBE2D3-231	ENST00000513098	XPO6	Q96QU8	1125 aa	Known RBP	13.21	□□□□□ -0.29
UBE2D3-231	ENST00000513098	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	13.21	□□□□□ -0.29	6e-7	■■■■■ 62.1
UBE2D3-231	ENST00000513098	RXFP3	Q9NSD7	469 aa		13.21	□□□□□ -0.29
UBE2D3-231	ENST00000513098	LSM7	Q9UK45	103 aa	Known RBP	13.21	□□□□□ -0.29
UBE2D3-231	ENST00000513098	HCN2	Q9UL51	889 aa		13.21	□□□□□ -0.29
UBE2D3-231	ENST00000513098	THADA	Q6YHU6	1953 aa		13.21	□□□□□ -0.29
UBE2D3-231	ENST00000513098	CHD8	Q9HCK8	2581 aa		13.2	□□□□□ -0.3
UBE2D3-231	ENST00000513098	GOLGA6L4	A6NEF3	574 aa		13.2	□□□□□ -0.3
UBE2D3-231	ENST00000513098	CISD3	P0C7P0	127 aa		13.2	□□□□□ -0.3
UBE2D3-231	ENST00000513098	TYR	P14679	529 aa		13.2	□□□□□ -0.3
UBE2D3-231	ENST00000513098	BECN1	Q14457	450 aa		13.2	□□□□□ -0.3
UBE2D3-231	ENST00000513098	MAP7D1	Q3KQU3	841 aa		13.2	□□□□□ -0.3
UBE2D3-231	ENST00000513098	CBWD6	Q4V339	395 aa		13.2	□□□□□ -0.3
UBE2D3-231	ENST00000513098	PPM1J	Q5JR12	505 aa		13.2	□□□□□ -0.3
UBE2D3-231	ENST00000513098	CBWD3	Q5JTY5	395 aa		13.2	□□□□□ -0.3
UBE2D3-231	ENST00000513098	CBWD5	Q5RIA9	395 aa		13.2	□□□□□ -0.3
UBE2D3-231	ENST00000513098	C10orf120	Q5SQS8	335 aa		13.2	□□□□□ -0.3
UBE2D3-231	ENST00000513098	STPG1	Q5TH74	334 aa		13.2	□□□□□ -0.3
UBE2D3-231	ENST00000513098	ARHGAP18	Q8N392	663 aa		13.2	□□□□□ -0.3
UBE2D3-231	ENST00000513098	TSG101	Q99816	390 aa		13.2	□□□□□ -0.3
UBE2D3-231	ENST00000513098	LSM14B	Q9BX40	385 aa	Known RBP	13.2	□□□□□ -0.3
UBE2D3-231	ENST00000513098	MMRN2	Q9H8L6	949 aa		13.2	□□□□□ -0.3
UBE2D3-231	ENST00000513098	CD248	Q9HCU0	757 aa		13.2	□□□□□ -0.3
UBE2D3-231	ENST00000513098	HOOK1	Q9UJC3	728 aa	Known RBP	13.2	□□□□□ -0.3
UBE2D3-231	ENST00000513098	NAGPA	Q9UK23	515 aa		13.2	□□□□□ -0.3
UBE2D3-231	ENST00000513098	KIAA1257	Q9ULG3	409 aa		13.2	□□□□□ -0.3
UBE2D3-231	ENST00000513098	PI4KA	P42356	2102 aa		13.19	□□□□□ -0.3
UBE2D3-231	ENST00000513098	PLXND1	Q9Y4D7	1925 aa		13.19	□□□□□ -0.3
UBE2D3-231	ENST00000513098	STC2	O76061	302 aa		13.19	□□□□□ -0.3
UBE2D3-231	ENST00000513098	KLKB1	P03952	638 aa		13.19	□□□□□ -0.3
UBE2D3-231	ENST00000513098	IRF1	P10914	325 aa		13.19	□□□□□ -0.3
UBE2D3-231	ENST00000513098	NTSR1	P30989	418 aa		13.19	□□□□□ -0.3
UBE2D3-231	ENST00000513098	GBP1	P32455	592 aa		13.19	□□□□□ -0.3
UBE2D3-231	ENST00000513098	CHKA	P35790	457 aa		13.19	□□□□□ -0.3
UBE2D3-231	ENST00000513098	PMS1	P54277	932 aa	Known RBP	13.19	□□□□□ -0.3
UBE2D3-231	ENST00000513098	SLC8A3	P57103	927 aa		13.19	□□□□□ -0.3
UBE2D3-231	ENST00000513098	CREB5	Q02930	508 aa		13.19	□□□□□ -0.3
UBE2D3-231	ENST00000513098	KDSR	Q06136	332 aa		13.19	□□□□□ -0.3
UBE2D3-231	ENST00000513098	CUL2	Q13617	745 aa		13.19	□□□□□ -0.3
UBE2D3-231	ENST00000513098	CCDC6	Q16204	474 aa		13.19	□□□□□ -0.3
UBE2D3-231	ENST00000513098	ZNF394	Q53GI3	561 aa		13.19	□□□□□ -0.3
UBE2D3-231	ENST00000513098	IL31	Q6EBC2	164 aa		13.19	□□□□□ -0.3
UBE2D3-231	ENST00000513098	GRAMD4	Q6IC98	578 aa		13.19	□□□□□ -0.3
UBE2D3-231	ENST00000513098	PIGZ	Q86VD9	579 aa		13.19	□□□□□ -0.3
UBE2D3-231	ENST00000513098	ZNF513	Q8N8E2	541 aa	Predicted RBP	13.19	□□□□□ -0.3
UBE2D3-231	ENST00000513098	SMARCE1	Q969G3	411 aa		13.19	□□□□□ -0.3
UBE2D3-231	ENST00000513098	SLC35C1	Q96A29	364 aa		13.19	□□□□□ -0.3
UBE2D3-231	ENST00000513098	DHTKD1	Q96HY7	919 aa	Predicted RBP	13.19	□□□□□ -0.3
UBE2D3-231	ENST00000513098	ARID3A	Q99856	593 aa		13.19	□□□□□ -0.3
UBE2D3-231	ENST00000513098	BBS2	Q9BXC9	721 aa		13.19	□□□□□ -0.3
UBE2D3-231	ENST00000513098	TPSD1	Q9BZJ3	242 aa		13.19	□□□□□ -0.3
UBE2D3-231	ENST00000513098	DCLK3	Q9C098	648 aa		13.19	□□□□□ -0.3
UBE2D3-231	ENST00000513098	METTL14	Q9HCE5	456 aa	Known RBP	13.19	□□□□□ -0.3
UBE2D3-231	ENST00000513098	ARMCX3	Q9UH62	379 aa	Predicted RBP	13.19	□□□□□ -0.3
UBE2D3-231	ENST00000513098	SLC27A6	Q9Y2P4	619 aa		13.19	□□□□□ -0.3
UBE2D3-231	ENST00000513098		A0A1W2PQF6	199 aa		13.18	□□□□□ -0.3
UBE2D3-231	ENST00000513098	NEDD8-MDP1	E9PL57	170 aa		13.18	□□□□□ -0.3
UBE2D3-231	ENST00000513098	GFRA2	O00451	464 aa		13.18	□□□□□ -0.3
UBE2D3-231	ENST00000513098	TRIM24	O15164	1050 aa		13.18	□□□□□ -0.3
UBE2D3-231	ENST00000513098	PENK	P01210	267 aa	Predicted RBP	13.18	□□□□□ -0.3
UBE2D3-231	ENST00000513098	BCKDHB	P21953	392 aa		13.18	□□□□□ -0.3
UBE2D3-231	ENST00000513098	PPP1R2	P41236	205 aa		13.18	□□□□□ -0.3
UBE2D3-231	ENST00000513098	DPP6	P42658	865 aa		13.18	□□□□□ -0.3
UBE2D3-231	ENST00000513098	YWHAE	P62258	255 aa	Known RBP	13.18	□□□□□ -0.3
UBE2D3-231	ENST00000513098	C10orf76	Q5T2E6	689 aa		13.18	□□□□□ -0.3
UBE2D3-231	ENST00000513098	TTC30A	Q86WT1	665 aa		13.18	□□□□□ -0.3
UBE2D3-231	ENST00000513098	SCML4	Q8N228	414 aa		13.18	□□□□□ -0.3
UBE2D3-231	ENST00000513098	UBR7	Q8N806	425 aa		13.18	□□□□□ -0.3
UBE2D3-231	ENST00000513098	JAKMIP2	Q96AA8	810 aa		13.18	□□□□□ -0.3
UBE2D3-231	ENST00000513098	SPACA7	Q96KW9	195 aa		13.18	□□□□□ -0.3
UBE2D3-231	ENST00000513098	CEP63	Q96MT8	703 aa		13.18	□□□□□ -0.3
UBE2D3-231	ENST00000513098	GABRG3	Q99928	467 aa		13.18	□□□□□ -0.3
UBE2D3-231	ENST00000513098	DNAJC17	Q9NVM6	304 aa	Known RBP	13.18	□□□□□ -0.3
UBE2D3-231	ENST00000513098	EVL	Q9UI08	416 aa	Predicted RBP	13.18	□□□□□ -0.3
UBE2D3-231	ENST00000513098	MBD1	Q9UIS9	605 aa	Predicted RBP	13.18	□□□□□ -0.3
UBE2D3-231	ENST00000513098	NUDT5	Q9UKK9	219 aa		13.18	□□□□□ -0.3
UBE2D3-231	ENST00000513098	INVS	Q9Y283	1065 aa		13.18	□□□□□ -0.3
UBE2D3-231	ENST00000513098	PRRT4	C9JH25	899 aa		13.17	□□□□□ -0.3
UBE2D3-231	ENST00000513098	XPO1	O14980	1071 aa	Known RBP	13.17	□□□□□ -0.3
UBE2D3-231	ENST00000513098	KHNYN	O15037	678 aa	Known RBP	13.17	□□□□□ -0.3
UBE2D3-231	ENST00000513098	NPC1	O15118	1278 aa		13.17	□□□□□ -0.3
UBE2D3-231	ENST00000513098	MDM4	O15151	490 aa		13.17	□□□□□ -0.3
UBE2D3-231	ENST00000513098	ZBED1	O96006	694 aa		13.17	□□□□□ -0.3
UBE2D3-231	ENST00000513098	TBXAS1	P24557	533 aa	Predicted RBP	13.17	□□□□□ -0.3
UBE2D3-231	ENST00000513098	HOXD12	P35452	270 aa		13.17	□□□□□ -0.3
UBE2D3-231	ENST00000513098	DGKG	P49619	791 aa		13.17	□□□□□ -0.3
UBE2D3-231	ENST00000513098	ZNF132	P52740	706 aa		13.17	□□□□□ -0.3
UBE2D3-231	ENST00000513098	PKDCC	Q504Y2	493 aa		13.17	□□□□□ -0.3
UBE2D3-231	ENST00000513098	TCERG1L	Q5VWI1	586 aa		13.17	□□□□□ -0.3
UBE2D3-231	ENST00000513098	PEAR1	Q5VY43	1037 aa	Predicted RBP	13.17	□□□□□ -0.3
UBE2D3-231	ENST00000513098	RNF43	Q68DV7	783 aa		13.17	□□□□□ -0.3
UBE2D3-231	ENST00000513098	TPGS1	Q6ZTW0	290 aa		13.17	□□□□□ -0.3
UBE2D3-231	ENST00000513098	LPCAT2	Q7L5N7	544 aa		13.17	□□□□□ -0.3
UBE2D3-231	ENST00000513098	MIB1	Q86YT6	1006 aa		13.17	□□□□□ -0.3
UBE2D3-231	ENST00000513098	FAM217A	Q8IXS0	508 aa		13.17	□□□□□ -0.3
UBE2D3-231	ENST00000513098	HMGB4	Q8WW32	186 aa		13.17	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms