RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 SLC15A5A6NIM6 579 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 CHADO15335 359 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 STX3Q13277 289 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 NCAPG2Q86XI2 1143 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 MTBPQ96DY7 904 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 KLC2Q9H0B6 622 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 WWP1Q9H0M0 922 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 PAPOLBQ9NRJ5 636 aaKnown RBP9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 ADAMTS5Q9UNA0 930 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 C2CD4BA6NLJ0 364 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 B4GALT4O60513 344 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 TSHRP16473 764 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 ATXN1P54253 815 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 OAZ1P54368 228 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 RPL10AP62906 217 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 SLC25A3Q00325 362 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 GBE1Q04446 702 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 ANGEL2Q5VTE6 544 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 JADE1Q6IE81 842 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 SLC30A9Q6PML9 568 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 MAP7D3Q8IWC1 876 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 SCUBE3Q8IX30 993 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 PQLC3Q8N755 202 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 PANX3Q96QZ0 392 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 HOXC10Q9NYD6 342 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 HMX2A2RU54 273 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 NOP56O00567 594 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 SPAG6O75602 509 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 KRT38O76015 456 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 APOEP02649 317 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 IQCF3P0C7M6 154 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 ICAM3P32942 547 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 NDST1P52848 882 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 EPHB1P54762 984 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 SATB1Q01826 763 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 AP1B1Q10567 949 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 ZRSR2Q15696 482 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 DCAF15Q66K64 600 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 ULK2Q8IYT8 1036 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 EFCAB3Q8N7B9 438 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 USP6NLQ92738 828 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 B3GNT5Q9BYG0 378 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 RNF19AQ9NV58 838 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 TSPAN16Q9UKR8 245 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 CAPN14A8MX76 684 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 ACKR2O00590 384 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 APOL1O14791 398 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 CILPO75339 1184 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 CIB2O75838 187 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 ARIH2O95376 493 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 CYP3A5P20815 502 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 KCNA4P22459 653 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 GMPSP49915 693 aaPredicted RBP9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 EN1Q05925 392 aaPredicted RBP9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 GRM1Q13255 1194 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 LBRQ14739 615 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 C6orf163Q5TEZ5 329 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 OR52E8Q6IFG1 317 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 IZUMO2Q6UXV1 221 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 DLK2Q6UY11 383 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 RSPH3Q86UC2 560 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 STKLD1Q8NE28 680 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 GSTCDQ8NEC7 633 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 FAM172AQ8WUF8 416 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 ZNF184Q99676 751 aaPredicted RBP9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 FAM49BQ9NUQ9 324 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 PPM1HQ9ULR3 514 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 ZNF646O15015 1829 aaPredicted RBP9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 SOWAHBA6NEL2 793 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 CLGNO14967 610 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 ITM2AO43736 263 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 ANPEPP15144 967 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 TFE3P19532 575 aaPredicted RBP9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 MXD4Q14582 209 aaPredicted RBP9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 ADGRF2Q8IZF7 708 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 COPS5Q92905 334 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 CCDC124Q96CT7 223 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 SNRNP25Q9BV90 132 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 MMADHCQ9H3L0 296 aaPredicted RBP9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 PCDH18Q9HCL0 1135 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 PPP1R1BQ9UD71 204 aaPredicted RBP9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 TAGLN3Q9UI15 199 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 PCNTO95613 3336 aa9.59□□□□□ -0.87
LIMCH1-215ENST00000512632 LOC100653049A0A140TA62 436 aa9.58□□□□□ -0.88
LIMCH1-215ENST00000512632 KRT34O76011 436 aa9.58□□□□□ -0.88
LIMCH1-215ENST00000512632 ENDOD1O94919 500 aa9.58□□□□□ -0.88
LIMCH1-215ENST00000512632 STAG3L1P0CL83 205 aa9.58□□□□□ -0.88
LIMCH1-215ENST00000512632 ADORA2AP29274 412 aa9.58□□□□□ -0.88
LIMCH1-215ENST00000512632 CCDC14Q49A88 953 aa9.58□□□□□ -0.88
LIMCH1-215ENST00000512632 FAM47CQ5HY64 1035 aa9.58□□□□□ -0.88
LIMCH1-215ENST00000512632 DEPDC1BQ8WUY9 529 aa9.58□□□□□ -0.88
LIMCH1-215ENST00000512632 HPDLQ96IR7 371 aa9.58□□□□□ -0.88
LIMCH1-215ENST00000512632 C7orf26Q96N11 449 aa9.58□□□□□ -0.88
LIMCH1-215ENST00000512632 BCO2Q9BYV7 579 aa9.58□□□□□ -0.88
LIMCH1-215ENST00000512632 CYP4F11Q9HBI6 524 aa9.58□□□□□ -0.88
LIMCH1-215ENST00000512632 IL1RAPL1Q9NZN1 696 aa9.58□□□□□ -0.88
LIMCH1-215ENST00000512632 SIRPGQ9P1W8 387 aa9.58□□□□□ -0.88
LIMCH1-215ENST00000512632 DNAJC16Q9Y2G8 782 aa9.58□□□□□ -0.88
LIMCH1-215ENST00000512632 KLF11O14901 512 aa9.58□□□□□ -0.88
LIMCH1-215ENST00000512632 SORBS2O94875 1100 aaKnown RBP9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms