RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 NQO1P15559 274 aaKnown RBP16.71■□□□□ 0.27
SQSTM1-213ENST00000510187 PSMA2P25787 234 aa16.71■□□□□ 0.27
SQSTM1-213ENST00000510187 CLCNKBP51801 687 aa16.71■□□□□ 0.27
SQSTM1-213ENST00000510187 TUSC3Q13454 348 aa16.71■□□□□ 0.27
SQSTM1-213ENST00000510187 ZNF268Q14587 947 aaPredicted RBP16.71■□□□□ 0.27
SQSTM1-213ENST00000510187 ACAP1Q15027 740 aa16.71■□□□□ 0.27
SQSTM1-213ENST00000510187 ZC3H12AQ5D1E8 599 aaKnown RBP16.71■□□□□ 0.27
SQSTM1-213ENST00000510187 EFHC2Q5JST6 749 aa16.71■□□□□ 0.27
SQSTM1-213ENST00000510187 PRUNE1Q86TP1 453 aa16.71■□□□□ 0.27
SQSTM1-213ENST00000510187 PPIL6Q8IXY8 311 aa16.71■□□□□ 0.27
SQSTM1-213ENST00000510187 CRIPAKQ8N1N5 446 aa16.71■□□□□ 0.27
SQSTM1-213ENST00000510187 SMC6Q96SB8 1091 aa16.71■□□□□ 0.27
SQSTM1-213ENST00000510187 TRABDQ9H4I3 376 aa16.71■□□□□ 0.27
SQSTM1-213ENST00000510187 MLXIPLQ9NP71 852 aa16.71■□□□□ 0.27
SQSTM1-213ENST00000510187 PSMC3IPQ9P2W1 217 aaPredicted RBP16.71■□□□□ 0.27
SQSTM1-213ENST00000510187 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.71■□□□□ 0.27
SQSTM1-213ENST00000510187 SGK1O00141 431 aa16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 UPP2O95045 317 aa16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 RPL9P32969 192 aaKnown RBP16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 PHBP35232 272 aa16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 TAF6P49848 677 aa16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 WDR4P57081 412 aaKnown RBP16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 RNASELQ05823 741 aaKnown RBP16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 FPGSQ05932 587 aa16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 PPIGQ13427 754 aaKnown RBP eCLIP16.7■□□□□ 0.264e-12■■□□□ 11.7
SQSTM1-213ENST00000510187 HIF1AQ16665 826 aa16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 TXNRD3NBQ6F5E7 133 aa16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 CGB2Q6NT52 195 aa16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 BCO2Q9BYV7 579 aa16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 PITPNM3Q9BZ71 974 aa16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 VPS37BQ9H9H4 285 aa16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 TBC1D13Q9NVG8 400 aa16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 SNX9Q9Y5X1 595 aa16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 ALPK3Q96L96 1907 aa16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 TTC3P53804 2025 aa16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 FOXO6A8MYZ6 492 aa16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 EFCAB14O75071 495 aa16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 KRT3P12035 628 aa16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 SYN1P17600 705 aa16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 FOXN2P32314 431 aa16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 RAP1GAPP47736 663 aa16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 GATMP50440 423 aa16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 ARL4CP56559 192 aa16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 LILRA4P59901 499 aa16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 ZKSCAN8Q15776 578 aaPredicted RBP16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 UPP1Q16831 310 aa16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 SV2CQ496J9 727 aa16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 PTPN20Q4JDL3 420 aa16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 DENND1BQ6P3S1 775 aa16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 ATP11CQ8NB49 1132 aa16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 CASD1Q96PB1 797 aa16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 FAM193BQ96PV7 902 aaPredicted RBP16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 PAAF1Q9BRP4 392 aa16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 SMYD3Q9H7B4 428 aa16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 NOD2Q9HC29 1040 aa16.7■□□□□ 0.26
SQSTM1-213ENST00000510187 KPNA7A9QM74 516 aa16.69■□□□□ 0.26
SQSTM1-213ENST00000510187 SPTLC1O15269 473 aa16.69■□□□□ 0.26
SQSTM1-213ENST00000510187 LRCH4O75427 683 aa16.69■□□□□ 0.26
SQSTM1-213ENST00000510187 BAIAP3O94812 1187 aa16.69■□□□□ 0.26
SQSTM1-213ENST00000510187 AMHP03971 560 aa16.69■□□□□ 0.26
SQSTM1-213ENST00000510187 ALADP13716 330 aa16.69■□□□□ 0.26
SQSTM1-213ENST00000510187 CCNB1P14635 433 aa16.69■□□□□ 0.26
SQSTM1-213ENST00000510187 ETS1P14921 441 aa16.69■□□□□ 0.26
SQSTM1-213ENST00000510187 EZRP15311 586 aaKnown RBP16.69■□□□□ 0.26
SQSTM1-213ENST00000510187 CDH8P55286 799 aa16.69■□□□□ 0.26
SQSTM1-213ENST00000510187 PLCB3Q01970 1234 aa16.69■□□□□ 0.26
SQSTM1-213ENST00000510187 PDIA2Q13087 525 aaKnown RBP16.69■□□□□ 0.26
SQSTM1-213ENST00000510187 PDK4Q16654 411 aa16.69■□□□□ 0.26
SQSTM1-213ENST00000510187 ZNF394Q53GI3 561 aa16.69■□□□□ 0.26
SQSTM1-213ENST00000510187 CYP4A22Q5TCH4 519 aa16.69■□□□□ 0.26
SQSTM1-213ENST00000510187 OTOP2Q7RTS6 562 aa16.69■□□□□ 0.26
SQSTM1-213ENST00000510187 ZNF280BQ86YH2 543 aa16.69■□□□□ 0.26
SQSTM1-213ENST00000510187 ZBED8Q8IZ13 594 aa16.69■□□□□ 0.26
SQSTM1-213ENST00000510187 UROC1Q96N76 676 aa16.69■□□□□ 0.26
SQSTM1-213ENST00000510187 TMEM121Q9BTD3 319 aa16.69■□□□□ 0.26
SQSTM1-213ENST00000510187 CYP3A43Q9HB55 503 aa16.69■□□□□ 0.26
SQSTM1-213ENST00000510187 ZMYND8Q9ULU4 1186 aaPredicted RBP16.69■□□□□ 0.26
SQSTM1-213ENST00000510187 MICAL3Q7RTP6 2002 aa16.69■□□□□ 0.26
SQSTM1-213ENST00000510187 TBKBP1A7MCY6 615 aa16.68■□□□□ 0.26
SQSTM1-213ENST00000510187 E7ESA3 106 aa16.68■□□□□ 0.26
SQSTM1-213ENST00000510187 ATP5HO75947 161 aa16.68■□□□□ 0.26
SQSTM1-213ENST00000510187 DDHD2O94830 711 aa16.68■□□□□ 0.26
SQSTM1-213ENST00000510187 KRT15P19012 456 aa16.68■□□□□ 0.26
SQSTM1-213ENST00000510187 RFC1P35251 1148 aaPredicted RBP16.68■□□□□ 0.26
SQSTM1-213ENST00000510187 GEMIN4P57678 1058 aaKnown RBP16.68■□□□□ 0.26
SQSTM1-213ENST00000510187 WDR5P61964 334 aaKnown RBP16.68■□□□□ 0.26
SQSTM1-213ENST00000510187 OTUD4Q01804 1114 aaKnown RBP16.68■□□□□ 0.26
SQSTM1-213ENST00000510187 FASTKD3Q14CZ7 662 aaKnown RBP16.68■□□□□ 0.26
SQSTM1-213ENST00000510187 KLHL38Q2WGJ6 581 aa16.68■□□□□ 0.26
SQSTM1-213ENST00000510187 ASRGL1Q7L266 308 aa16.68■□□□□ 0.26
SQSTM1-213ENST00000510187 C16orf59Q7L2K0 433 aa16.68■□□□□ 0.26
SQSTM1-213ENST00000510187 TBC1D1Q86TI0 1168 aaPredicted RBP16.68■□□□□ 0.26
SQSTM1-213ENST00000510187 FITM2Q8N6M3 262 aa16.68■□□□□ 0.26
SQSTM1-213ENST00000510187 ACTL9Q8TC94 416 aa16.68■□□□□ 0.26
SQSTM1-213ENST00000510187 FBF1Q8TES7 1133 aa16.68■□□□□ 0.26
SQSTM1-213ENST00000510187 DPF3Q92784 378 aa16.68■□□□□ 0.26
SQSTM1-213ENST00000510187 NCAPGQ9BPX3 1015 aa16.68■□□□□ 0.26
SQSTM1-213ENST00000510187 SDCBP2Q9H190 292 aa16.68■□□□□ 0.26
SQSTM1-213ENST00000510187 FAM124BQ9H5Z6 455 aaPredicted RBP16.68■□□□□ 0.26
SQSTM1-213ENST00000510187 ARHGEF3Q9NR81 526 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms