RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 TEX264Q9Y6I9 313 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 SMIM28A0A1B0GU29 152 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 PIK3R2O00459 728 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 TRDMT1O14717 391 aaKnown RBP12.44□□□□□ -0.42
NUP54-202ENST00000502850 ATP2C2O75185 946 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 SPAG7O75391 227 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 STK10O94804 968 aaKnown RBP12.44□□□□□ -0.42
NUP54-202ENST00000502850 MT-ND3P03897 115 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 RPLP2P05387 115 aaKnown RBP12.44□□□□□ -0.42
NUP54-202ENST00000502850 KRT4P19013 534 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 CYP2F1P24903 491 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 ARL4AP40617 200 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 ELK3P41970 407 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 ADAM17P78536 824 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 TMEM62Q0P6H9 643 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 SNCBQ16143 134 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 MSS51Q4VC12 460 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 SPDYAQ5MJ70 313 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 SH3PXD2AQ5TCZ1 1133 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 CYB5D1Q6P9G0 228 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 NPNTQ6UXI9 565 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 LIMS2Q7Z4I7 341 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 SCUBE3Q8IX30 993 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 ADGRF2Q8IZF7 708 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 FUKQ8N0W3 1084 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 C4orf33Q8N1A6 199 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 PQLC3Q8N755 202 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 PCDH19Q8TAB3 1148 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 CD99L2Q8TCZ2 262 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 KBTBD7Q8WVZ9 684 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 C18orf25Q96B23 403 aaPredicted RBP12.44□□□□□ -0.42
NUP54-202ENST00000502850 PIWIL1Q96J94 861 aaKnown RBP12.44□□□□□ -0.42
NUP54-202ENST00000502850 QKIQ96PU8 341 aaKnown RBP eCLIP12.44□□□□□ -0.42
NUP54-202ENST00000502850 USP29Q9HBJ7 922 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 XAB2Q9HCS7 855 aaKnown RBP12.44□□□□□ -0.42
NUP54-202ENST00000502850 TXLNGQ9NUQ3 528 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 ETNK2Q9NVF9 386 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 ZNF180Q9UJW8 692 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 AP4E1Q9UPM8 1137 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 CHMP2BQ9UQN3 213 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 HEY1Q9Y5J3 304 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 USH1CQ9Y6N9 552 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 SF3B1O75533 1304 aaKnown RBP eCLIP12.44□□□□□ -0.422e-6■■■■■ 120.6
NUP54-202ENST00000502850 C17orf102A2RUQ5 167 aa12.43□□□□□ -0.42
NUP54-202ENST00000502850 KBTBD13C9JR72 458 aa12.43□□□□□ -0.42
NUP54-202ENST00000502850 PPEF2O14830 753 aa12.43□□□□□ -0.42
NUP54-202ENST00000502850 KPNA6O60684 536 aa12.43□□□□□ -0.42
NUP54-202ENST00000502850 EDF1O60869 148 aaKnown RBP12.43□□□□□ -0.42
NUP54-202ENST00000502850 DAB1O75553 588 aa12.43□□□□□ -0.42
NUP54-202ENST00000502850 GCATO75600 419 aa12.43□□□□□ -0.42
NUP54-202ENST00000502850 FAM155BO75949 473 aa12.43□□□□□ -0.42
NUP54-202ENST00000502850 KRT37O76014 449 aa12.43□□□□□ -0.42
NUP54-202ENST00000502850 IL4RP24394 825 aa12.43□□□□□ -0.42
NUP54-202ENST00000502850 ADORA2BP29275 332 aa12.43□□□□□ -0.42
NUP54-202ENST00000502850 LRPAP1P30533 357 aa12.43□□□□□ -0.42
NUP54-202ENST00000502850 RPA3P35244 121 aaPredicted RBP12.43□□□□□ -0.42
NUP54-202ENST00000502850 PSMC4P43686 418 aa12.43□□□□□ -0.42
NUP54-202ENST00000502850 AIF1P55008 147 aa12.43□□□□□ -0.42
NUP54-202ENST00000502850 YWHAGP61981 247 aaKnown RBP eCLIP12.43□□□□□ -0.42
NUP54-202ENST00000502850 CDK16Q00536 496 aa12.43□□□□□ -0.42
NUP54-202ENST00000502850 PTK7Q13308 1070 aa12.43□□□□□ -0.42
NUP54-202ENST00000502850 GALNTL6Q49A17 601 aa12.43□□□□□ -0.42
NUP54-202ENST00000502850 PPP6R3Q5H9R7 873 aaPredicted RBP12.43□□□□□ -0.42
NUP54-202ENST00000502850 GLRA4Q5JXX5 417 aa12.43□□□□□ -0.42
NUP54-202ENST00000502850 OLFML2BQ68BL8 750 aa12.43□□□□□ -0.42
NUP54-202ENST00000502850 TAF2Q6P1X5 1199 aa12.43□□□□□ -0.42
NUP54-202ENST00000502850 TMEM130Q8N3G9 435 aa12.43□□□□□ -0.42
NUP54-202ENST00000502850 C7orf31Q8N865 590 aa12.43□□□□□ -0.42
NUP54-202ENST00000502850 MAGEC3Q8TD91 643 aa12.43□□□□□ -0.42
NUP54-202ENST00000502850 DCAKDQ8WVC6 231 aa12.43□□□□□ -0.42
NUP54-202ENST00000502850 DNAJB3Q8WWF6 145 aa12.43□□□□□ -0.42
NUP54-202ENST00000502850 SLC44A1Q8WWI5 657 aa12.43□□□□□ -0.42
NUP54-202ENST00000502850 KHSRPQ92945 711 aaKnown RBP eCLIP12.43□□□□□ -0.424e-7■■■■□ 23.6
NUP54-202ENST00000502850 VPS11Q9H270 941 aa12.43□□□□□ -0.42
NUP54-202ENST00000502850 DHX35Q9H5Z1 703 aaKnown RBP12.43□□□□□ -0.42
NUP54-202ENST00000502850 C10orf88Q9H8K7 445 aa12.43□□□□□ -0.42
NUP54-202ENST00000502850 ABCF3Q9NUQ8 709 aa12.43□□□□□ -0.42
NUP54-202ENST00000502850 SLC38A7Q9NVC3 462 aa12.43□□□□□ -0.42
NUP54-202ENST00000502850 STAP1Q9ULZ2 295 aa12.43□□□□□ -0.42
NUP54-202ENST00000502850 PHTF1Q9UMS5 762 aa12.43□□□□□ -0.42
NUP54-202ENST00000502850 TCRBV7S3A2A0A539 114 aa12.42□□□□□ -0.42
NUP54-202ENST00000502850 TCRBV9S1A1TA0A576 114 aa12.42□□□□□ -0.42
NUP54-202ENST00000502850 M0QZ92 97 aa12.42□□□□□ -0.42
NUP54-202ENST00000502850 CHUKO15111 745 aa12.42□□□□□ -0.42
NUP54-202ENST00000502850 UBOX5O94941 541 aa12.42□□□□□ -0.42
NUP54-202ENST00000502850 TROVE2P10155 538 aaKnown RBP eCLIP12.42□□□□□ -0.42
NUP54-202ENST00000502850 RBL1P28749 1068 aa12.42□□□□□ -0.42
NUP54-202ENST00000502850 L1CAMP32004 1257 aa12.42□□□□□ -0.42
NUP54-202ENST00000502850 FOXN2P32314 431 aa12.42□□□□□ -0.42
NUP54-202ENST00000502850 FDFT1P37268 417 aa12.42□□□□□ -0.42
NUP54-202ENST00000502850 MATKP42679 507 aa12.42□□□□□ -0.42
NUP54-202ENST00000502850 YWHAZP63104 245 aaKnown RBP12.42□□□□□ -0.42
NUP54-202ENST00000502850 BNIP1Q12981 228 aa12.42□□□□□ -0.42
NUP54-202ENST00000502850 SPRED3Q2MJR0 410 aa12.42□□□□□ -0.42
NUP54-202ENST00000502850 SLC25A52Q3SY17 297 aa12.42□□□□□ -0.42
NUP54-202ENST00000502850 TTC39BQ5VTQ0 682 aaPredicted RBP12.42□□□□□ -0.42
NUP54-202ENST00000502850 ICE2Q659A1 982 aa12.42□□□□□ -0.42
NUP54-202ENST00000502850 HEATR6Q6AI08 1181 aaKnown RBP12.42□□□□□ -0.42
NUP54-202ENST00000502850 LVRNQ6Q4G3 990 aa12.42□□□□□ -0.42
NUP54-202ENST00000502850 SLC26A11Q86WA9 606 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms