RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 POMKQ9H5K3 350 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 MMRN2Q9H8L6 949 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 TBC1D17Q9HA65 648 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 FBXO28Q9NVF7 368 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 AATFQ9NY61 560 aaKnown RBP eCLIP4.56□□□□□ -1.68
USP54-217ENST00000498213 CEP72Q9P209 647 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 C11orf21Q9P2W6 132 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 HECAQ9UBI9 543 aaPredicted RBP4.56□□□□□ -1.68
USP54-217ENST00000498213 APOBEC2Q9Y235 224 aaKnown RBP4.56□□□□□ -1.68
USP54-217ENST00000498213 RIPK3Q9Y572 518 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 RAI2Q9Y5P3 530 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 MYH2Q9UKX2 1941 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 MYH13Q9UKX3 1938 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 ATAD5Q96QE3 1844 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 AKAP13Q12802 2813 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 MYO10Q9HD67 2058 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 DMXL2Q8TDJ6 3036 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 ITPR3Q14573 2671 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 A0A087X0B3 334 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP4.55□□□□□ -1.68
USP54-217ENST00000498213 C5orf67F2Z3F1 127 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 PLA2G6O60733 806 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 FAM20BO75063 409 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 RECQL4O94761 1208 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 SEC24DO94855 1032 aaPredicted RBP4.55□□□□□ -1.68
USP54-217ENST00000498213 ITGB1P05556 798 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 LINC00271P0C7V0 271 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 CKBP12277 381 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 TRIM27P14373 513 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 GLULP15104 373 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 GYPEP15421 78 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 PTGS2P35354 604 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 CASRP41180 1078 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 SESN3P58005 492 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 OS9Q13438 667 aaPredicted RBP4.55□□□□□ -1.68
USP54-217ENST00000498213 SEPT2Q15019 361 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 UBE3CQ15386 1083 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 ANKRD54Q6NXT1 300 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 SYCE2Q6PIF2 218 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 TSSK4Q6SA08 328 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 RASSF3Q86WH2 238 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 FAM9BQ8IZU0 186 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 CLASRPQ8N2M8 674 aaKnown RBP4.55□□□□□ -1.68
USP54-217ENST00000498213 TDRD5Q8NAT2 981 aaKnown RBP4.55□□□□□ -1.68
USP54-217ENST00000498213 GLB1L3Q8NCI6 653 aaPredicted RBP4.55□□□□□ -1.68
USP54-217ENST00000498213 PPP1R14CQ8TAE6 165 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 CAGE1Q8TC20 777 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 ATP8B4Q8TF62 1192 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 MAP4K1Q92918 833 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 TOP1MTQ969P6 601 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 CLIP3Q96DZ5 547 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 KIF1BPQ96EK5 621 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 IL17RAQ96F46 866 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 MPHOSPH6Q99547 160 aaKnown RBP4.55□□□□□ -1.68
USP54-217ENST00000498213 MNTQ99583 582 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 RIOK1Q9BRS2 568 aaKnown RBP4.55□□□□□ -1.68
USP54-217ENST00000498213 SCNM1Q9BWG6 230 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 TRIM8Q9BZR9 551 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 NRDE2Q9H7Z3 1164 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 VCPKMTQ9H867 229 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 SLC2A4RGQ9NR83 387 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 SEMA4GQ9NTN9 838 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 ARPP21Q9UBL0 812 aaPredicted RBP4.55□□□□□ -1.68
USP54-217ENST00000498213 PRSS50Q9UI38 385 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 NOTCH2Q04721 2471 aa4.55□□□□□ -1.68
USP54-217ENST00000498213 TLDC2A0PJX2 215 aa4.54□□□□□ -1.68
USP54-217ENST00000498213 ASB14A6NK59 587 aa4.54□□□□□ -1.68
USP54-217ENST00000498213 B4DLN1 442 aa4.54□□□□□ -1.68
USP54-217ENST00000498213 J3QKU1 62 aa4.54□□□□□ -1.68
USP54-217ENST00000498213 MPHOSPH10O00566 681 aaKnown RBP4.54□□□□□ -1.68
USP54-217ENST00000498213 HOXA3O43365 443 aaPredicted RBP4.54□□□□□ -1.68
USP54-217ENST00000498213 TBC1D4O60343 1298 aa4.54□□□□□ -1.68
USP54-217ENST00000498213 SURF6O75683 361 aaKnown RBP4.54□□□□□ -1.68
USP54-217ENST00000498213 IDH1O75874 414 aaKnown RBP4.54□□□□□ -1.68
USP54-217ENST00000498213 C1QL1O75973 258 aa4.54□□□□□ -1.68
USP54-217ENST00000498213 STC2O76061 302 aa4.54□□□□□ -1.68
USP54-217ENST00000498213 PEX11BO96011 259 aa4.54□□□□□ -1.68
USP54-217ENST00000498213 LPLP06858 475 aa4.54□□□□□ -1.68
USP54-217ENST00000498213 ZFYP08048 801 aaPredicted RBP4.54□□□□□ -1.68
USP54-217ENST00000498213 CPEP16870 476 aa4.54□□□□□ -1.68
USP54-217ENST00000498213 GUCY1A2P33402 732 aa4.54□□□□□ -1.68
USP54-217ENST00000498213 SHMT1P34896 483 aa4.54□□□□□ -1.68
USP54-217ENST00000498213 PLCD1P51178 756 aa4.54□□□□□ -1.68
USP54-217ENST00000498213 MRPL12P52815 198 aaKnown RBP4.54□□□□□ -1.68
USP54-217ENST00000498213 WNT3AP56704 352 aa4.54□□□□□ -1.68
USP54-217ENST00000498213 MEF2AQ02078 507 aaPredicted RBP4.54□□□□□ -1.68
USP54-217ENST00000498213 CNTN2Q02246 1040 aa4.54□□□□□ -1.68
USP54-217ENST00000498213 TDGQ13569 410 aa4.54□□□□□ -1.68
USP54-217ENST00000498213 UGT8Q16880 541 aa4.54□□□□□ -1.68
USP54-217ENST00000498213 SBK1Q52WX2 424 aa4.54□□□□□ -1.68
USP54-217ENST00000498213 BRDTQ58F21 947 aaPredicted RBP4.54□□□□□ -1.68
USP54-217ENST00000498213 DCAF17Q5H9S7 520 aaPredicted RBP4.54□□□□□ -1.68
USP54-217ENST00000498213 ZNF618Q5T7W0 954 aa4.54□□□□□ -1.68
USP54-217ENST00000498213 IGFL4Q6B9Z1 124 aa4.54□□□□□ -1.68
USP54-217ENST00000498213 NFRKBQ6P4R8 1299 aa4.54□□□□□ -1.68
USP54-217ENST00000498213 TAS1R1Q7RTX1 841 aa4.54□□□□□ -1.68
USP54-217ENST00000498213 FBXO16Q8IX29 292 aaPredicted RBP4.54□□□□□ -1.68
USP54-217ENST00000498213 CPXCR1Q8N123 301 aa4.54□□□□□ -1.68
USP54-217ENST00000498213 UBR7Q8N806 425 aa4.54□□□□□ -1.68
USP54-217ENST00000498213 PRPF38AQ8NAV1 312 aaKnown RBP4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms