RNA–Protein interactions for RNA: ENST00000497498.1

CBX3-208, Transcript of chromobox 3, human

TSL 2

Gene CBX3, Length 922 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CBX3-208	ENST00000497498	VPS50	Q96JG6	964 aa		4.15	□□□□□ -1.75
CBX3-208	ENST00000497498	HIST1H2AA	Q96QV6	131 aa		4.15	□□□□□ -1.75
CBX3-208	ENST00000497498	ZBTB40	Q9NUA8	1239 aa		4.15	□□□□□ -1.75
CBX3-208	ENST00000497498	DNAJB11	Q9UBS4	358 aa		4.15	□□□□□ -1.75
CBX3-208	ENST00000497498	SLC27A6	Q9Y2P4	619 aa		4.15	□□□□□ -1.75
CBX3-208	ENST00000497498	THRAP3	Q9Y2W1	955 aa	Known RBP	4.15	□□□□□ -1.75
CBX3-208	ENST00000497498	CNTNAP2	Q9UHC6	1331 aa		4.15	□□□□□ -1.75
CBX3-208	ENST00000497498	COL15A1	P39059	1388 aa		4.14	□□□□□ -1.75
CBX3-208	ENST00000497498	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	4.14	□□□□□ -1.75
CBX3-208	ENST00000497498		A6NNZ2	444 aa		4.14	□□□□□ -1.75
CBX3-208	ENST00000497498		H3BNX3	289 aa		4.14	□□□□□ -1.75
CBX3-208	ENST00000497498	INPPL1	O15357	1258 aa		4.14	□□□□□ -1.75
CBX3-208	ENST00000497498	PRPF3	O43395	683 aa	Known RBP	4.14	□□□□□ -1.75
CBX3-208	ENST00000497498	PRAMEF2	O60811	474 aa		4.14	□□□□□ -1.75
CBX3-208	ENST00000497498	INMT	O95050	263 aa		4.14	□□□□□ -1.75
CBX3-208	ENST00000497498	FGF2	P09038	288 aa		4.14	□□□□□ -1.75
CBX3-208	ENST00000497498	NTSR1	P30989	418 aa		4.14	□□□□□ -1.75
CBX3-208	ENST00000497498	HTR6	P50406	440 aa		4.14	□□□□□ -1.75
CBX3-208	ENST00000497498	CACNB3	P54284	484 aa		4.14	□□□□□ -1.75
CBX3-208	ENST00000497498	KRTAP10-6	P60371	365 aa	Predicted RBP	4.14	□□□□□ -1.75
CBX3-208	ENST00000497498	EIF4A1	P60842	406 aa	Known RBP	4.14	□□□□□ -1.75
CBX3-208	ENST00000497498	TXNL4A	P83876	142 aa	Known RBP	4.14	□□□□□ -1.75
CBX3-208	ENST00000497498	MINDY4	Q4G0A6	757 aa		4.14	□□□□□ -1.75
CBX3-208	ENST00000497498	FAM102B	Q5T8I3	360 aa		4.14	□□□□□ -1.75
CBX3-208	ENST00000497498	KIAA1161	Q6NSJ0	714 aa		4.14	□□□□□ -1.75
CBX3-208	ENST00000497498	MZT2A	Q6P582	158 aa		4.14	□□□□□ -1.75
CBX3-208	ENST00000497498	COLCA1	Q6ZS62	124 aa		4.14	□□□□□ -1.75
CBX3-208	ENST00000497498	SESTD1	Q86VW0	696 aa		4.14	□□□□□ -1.75
CBX3-208	ENST00000497498	MMP21	Q8N119	569 aa		4.14	□□□□□ -1.75
CBX3-208	ENST00000497498	FAM71D	Q8N9W8	422 aa		4.14	□□□□□ -1.75
CBX3-208	ENST00000497498	P2RY11	Q96G91	374 aa		4.14	□□□□□ -1.75
CBX3-208	ENST00000497498	APIP	Q96GX9	242 aa		4.14	□□□□□ -1.75
CBX3-208	ENST00000497498	MSLNL	Q96KJ4	702 aa		4.14	□□□□□ -1.75
CBX3-208	ENST00000497498	CAMK1G	Q96NX5	476 aa		4.14	□□□□□ -1.75
CBX3-208	ENST00000497498	TM2D2	Q9BX73	214 aa		4.14	□□□□□ -1.75
CBX3-208	ENST00000497498	ZCWPW1	Q9H0M4	648 aa		4.14	□□□□□ -1.75
CBX3-208	ENST00000497498	FAM204A	Q9H8W3	233 aa		4.14	□□□□□ -1.75
CBX3-208	ENST00000497498	USP29	Q9HBJ7	922 aa		4.14	□□□□□ -1.75
CBX3-208	ENST00000497498	SQOR	Q9Y6N5	450 aa		4.14	□□□□□ -1.75
CBX3-208	ENST00000497498	LOC105378220	A0A1B0GUY1	285 aa	Predicted RBP	4.13	□□□□□ -1.75
CBX3-208	ENST00000497498		B4DGG1	531 aa		4.13	□□□□□ -1.75
CBX3-208	ENST00000497498	RRH	O14718	337 aa		4.13	□□□□□ -1.75
CBX3-208	ENST00000497498	SMAD6	O43541	496 aa	Known RBP	4.13	□□□□□ -1.75
CBX3-208	ENST00000497498	SNX2	O60749	519 aa		4.13	□□□□□ -1.75
CBX3-208	ENST00000497498	MBP	P02686	304 aa	Predicted RBP	4.13	□□□□□ -1.75
CBX3-208	ENST00000497498	MYF5	P13349	255 aa		4.13	□□□□□ -1.75
CBX3-208	ENST00000497498	TNFRSF1B	P20333	461 aa		4.13	□□□□□ -1.75
CBX3-208	ENST00000497498	RBL1	P28749	1068 aa		4.13	□□□□□ -1.75
CBX3-208	ENST00000497498	HTR7	P34969	479 aa		4.13	□□□□□ -1.75
CBX3-208	ENST00000497498	CPA2	P48052	419 aa		4.13	□□□□□ -1.75
CBX3-208	ENST00000497498	KRTAP10-7	P60409	375 aa	Predicted RBP	4.13	□□□□□ -1.75
CBX3-208	ENST00000497498	IGBP1	P78318	339 aa		4.13	□□□□□ -1.75
CBX3-208	ENST00000497498	B4GALNT1	Q00973	533 aa		4.13	□□□□□ -1.75
CBX3-208	ENST00000497498	DNASE1L3	Q13609	305 aa		4.13	□□□□□ -1.75
CBX3-208	ENST00000497498	ERV3-1	Q14264	604 aa		4.13	□□□□□ -1.75
CBX3-208	ENST00000497498	KCNAB1	Q14722	419 aa		4.13	□□□□□ -1.75
CBX3-208	ENST00000497498	POLD3	Q15054	466 aa	Predicted RBP	4.13	□□□□□ -1.75
CBX3-208	ENST00000497498	MANEAL	Q5VSG8	457 aa		4.13	□□□□□ -1.75
CBX3-208	ENST00000497498	CLEC9A	Q6UXN8	241 aa		4.13	□□□□□ -1.75
CBX3-208	ENST00000497498	PELI3	Q8N2H9	469 aa		4.13	□□□□□ -1.75
CBX3-208	ENST00000497498	DDX51	Q8N8A6	666 aa	Known RBP eCLIP	4.13	□□□□□ -1.75
CBX3-208	ENST00000497498	BCAS4	Q8TDM0	211 aa		4.13	□□□□□ -1.75
CBX3-208	ENST00000497498	LRTOMT	Q8WZ04	291 aa		4.13	□□□□□ -1.75
CBX3-208	ENST00000497498	SELENOO	Q9BVL4	669 aa		4.13	□□□□□ -1.75
CBX3-208	ENST00000497498	CINP	Q9BW66	212 aa	Predicted RBP	4.13	□□□□□ -1.75
CBX3-208	ENST00000497498	LRRC27	Q9C0I9	530 aa		4.13	□□□□□ -1.75
CBX3-208	ENST00000497498	NUAK2	Q9H093	628 aa		4.13	□□□□□ -1.75
CBX3-208	ENST00000497498	FAM234A	Q9H0X4	552 aa		4.13	□□□□□ -1.75
CBX3-208	ENST00000497498	AGO4	Q9HCK5	861 aa	Known RBP	4.13	□□□□□ -1.75
CBX3-208	ENST00000497498	SEMA4B	Q9NPR2	832 aa	Predicted RBP	4.13	□□□□□ -1.75
CBX3-208	ENST00000497498	VPS45	Q9NRW7	570 aa		4.13	□□□□□ -1.75
CBX3-208	ENST00000497498	WWOX	Q9NZC7	414 aa		4.13	□□□□□ -1.75
CBX3-208	ENST00000497498	TTBK1	Q5TCY1	1321 aa	Predicted RBP	4.13	□□□□□ -1.75
CBX3-208	ENST00000497498	C2CD4B	A6NLJ0	364 aa		4.12	□□□□□ -1.75
CBX3-208	ENST00000497498	PRR23D1	E9PI22	279 aa	Predicted RBP	4.12	□□□□□ -1.75
CBX3-208	ENST00000497498	CA12	O43570	354 aa		4.12	□□□□□ -1.75
CBX3-208	ENST00000497498	PLAU	P00749	431 aa		4.12	□□□□□ -1.75
CBX3-208	ENST00000497498	HRG	P04196	525 aa		4.12	□□□□□ -1.75
CBX3-208	ENST00000497498	CD63	P08962	238 aa		4.12	□□□□□ -1.75
CBX3-208	ENST00000497498	PRR23D2	P0DMB1	279 aa	Predicted RBP	4.12	□□□□□ -1.75
CBX3-208	ENST00000497498	JAK3	P52333	1124 aa		4.12	□□□□□ -1.75
CBX3-208	ENST00000497498	CCDC15	Q0P6D6	951 aa		4.12	□□□□□ -1.75
CBX3-208	ENST00000497498	MTAP	Q13126	283 aa		4.12	□□□□□ -1.75
CBX3-208	ENST00000497498	SEMA3A	Q14563	771 aa		4.12	□□□□□ -1.75
CBX3-208	ENST00000497498	KPNB1	Q14974	876 aa	Known RBP	4.12	□□□□□ -1.75
CBX3-208	ENST00000497498	RNF220	Q5VTB9	566 aa		4.12	□□□□□ -1.75
CBX3-208	ENST00000497498	NXN	Q6DKJ4	435 aa		4.12	□□□□□ -1.75
CBX3-208	ENST00000497498	GRHL2	Q6ISB3	625 aa		4.12	□□□□□ -1.75
CBX3-208	ENST00000497498	UNC13D	Q70J99	1090 aa		4.12	□□□□□ -1.75
CBX3-208	ENST00000497498	IPCEF1	Q8WWN9	437 aa	Predicted RBP	4.12	□□□□□ -1.75
CBX3-208	ENST00000497498	FAM227B	Q96M60	508 aa		4.12	□□□□□ -1.75
CBX3-208	ENST00000497498	ZNF287	Q9HBT7	754 aa		4.12	□□□□□ -1.75
CBX3-208	ENST00000497498	MLXIPL	Q9NP71	852 aa		4.12	□□□□□ -1.75
CBX3-208	ENST00000497498	OGDHL	Q9ULD0	1010 aa		4.12	□□□□□ -1.75
CBX3-208	ENST00000497498	C16orf96	A6NNT2	1141 aa		4.11	□□□□□ -1.75
CBX3-208	ENST00000497498	TMIGD3	P0DMS9	266 aa	Predicted RBP	4.11	□□□□□ -1.75
CBX3-208	ENST00000497498	TMEM225B	P0DP42	221 aa		4.11	□□□□□ -1.75
CBX3-208	ENST00000497498	GALNS	P34059	522 aa		4.11	□□□□□ -1.75
CBX3-208	ENST00000497498	CARS	P49589	748 aa	Known RBP	4.11	□□□□□ -1.75
CBX3-208	ENST00000497498	WDR5	P61964	334 aa	Known RBP	4.11	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms