RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 H2AFXP16104 143 aaPredicted RBP8.7□□□□□ -1.02
USP54-215ENST00000497106 LMO2P25791 158 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 DAOAP59103 153 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 RPL7AP62424 266 aaKnown RBP8.7□□□□□ -1.02
USP54-215ENST00000497106 PTK6Q13882 451 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 SMTNL2Q2TAL5 461 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 KRT71Q3SY84 523 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 RABGAP1LQ5R372 815 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 NUGGCQ68CJ6 796 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 COLGALT2Q8IYK4 626 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 DYDC1Q8WWB3 177 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 MRPS31Q92665 395 aaKnown RBP8.7□□□□□ -1.02
USP54-215ENST00000497106 VPS37BQ9H9H4 285 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 GDF3Q9NR23 364 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 KLHL11Q9NVR0 708 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 CWC15Q9P013 229 aaKnown RBP8.7□□□□□ -1.02
USP54-215ENST00000497106 GRIN2DO15399 1336 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 SPAG6O75602 509 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 CYP2F1P24903 491 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 ETFBP38117 255 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 GPS1Q13098 491 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 MFSD7Q6UXD7 560 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 CLEC20AQ6ZU45 233 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 BEND5Q7L4P6 421 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 HERC6Q8IVU3 1022 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 TFB1MQ8WVM0 346 aaKnown RBP8.69□□□□□ -1.02
USP54-215ENST00000497106 CAVIN3Q969G5 261 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 TBC1D31Q96DN5 1066 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 ZCWPW1Q9H0M4 648 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 RNF19AQ9NV58 838 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 KLHL8Q9P2G9 620 aaPredicted RBP8.69□□□□□ -1.02
USP54-215ENST00000497106 IPO11Q9UI26 975 aaKnown RBP8.69□□□□□ -1.02
USP54-215ENST00000497106 HPCAL4Q9UM19 191 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 I3L4J1 428 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 EIF3HO15372 352 aaKnown RBP eCLIP8.69□□□□□ -1.02
USP54-215ENST00000497106 USP17L7P0C7H9 530 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 RARAP10276 462 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 TBX4P57082 545 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 XRCC4Q13426 336 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 MFSD5Q6N075 450 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 C1orf228Q6PIY5 440 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 KBTBD7Q8WVZ9 684 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 NTAN1Q96AB6 310 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 LCTP09848 1927 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 PAPSS1O43252 624 aaPredicted RBP8.69□□□□□ -1.02
USP54-215ENST00000497106 OAZ2O95190 189 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 CPP00450 1065 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 PMS2P54278 862 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 HIC1Q14526 733 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 SKIDA1Q1XH10 827 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 DRICH1Q6PGQ1 229 aaPredicted RBP8.69□□□□□ -1.02
USP54-215ENST00000497106 PPIL6Q8IXY8 311 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 FUKQ8N0W3 1084 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 ATPAF2Q8N5M1 289 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 JOSD2Q8TAC2 188 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 SAMD11Q96NU1 681 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 NRDE2Q9H7Z3 1164 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 CYP4F11Q9HBI6 524 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 AFF4Q9UHB7 1163 aaKnown RBP8.69□□□□□ -1.02
USP54-215ENST00000497106 INSL6Q9Y581 213 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 ARHGAP42A6NI28 874 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 RGS16O15492 202 aaPredicted RBP8.69□□□□□ -1.02
USP54-215ENST00000497106 MGEA5O60502 916 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 CXCL10P02778 98 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 HSPA1AP0DMV8 641 aaKnown RBP8.69□□□□□ -1.02
USP54-215ENST00000497106 HSPA1BP0DMV9 641 aaKnown RBP8.69□□□□□ -1.02
USP54-215ENST00000497106 HSPA8P11142 646 aaKnown RBP8.69□□□□□ -1.02
USP54-215ENST00000497106 NEFHP12036 1026 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 CA4P22748 312 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 TKTP29401 623 aaKnown RBP8.69□□□□□ -1.02
USP54-215ENST00000497106 AARSP49588 968 aaKnown RBP eCLIP8.69□□□□□ -1.02
USP54-215ENST00000497106 OXCT1P55809 520 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 OTUD4Q01804 1114 aaKnown RBP8.69□□□□□ -1.02
USP54-215ENST00000497106 NR1H3Q13133 447 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 MORF4L2Q15014 288 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 TMCO4Q5TGY1 634 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 ZNF771Q7L3S4 317 aaPredicted RBP8.69□□□□□ -1.02
USP54-215ENST00000497106 TMC7Q7Z402 723 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 ZNF557Q8N988 423 aaPredicted RBP8.69□□□□□ -1.02
USP54-215ENST00000497106 OVCA2Q8WZ82 227 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 VAT1Q99536 393 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 HERC2P3Q9BVR0 1158 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 IQCGQ9H095 443 aaKnown RBP8.69□□□□□ -1.02
USP54-215ENST00000497106 CRISPLD2Q9H0B8 497 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 BACE2Q9Y5Z0 518 aa8.69□□□□□ -1.02
USP54-215ENST00000497106 MYBPHLA2RUH7 354 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 CLDN5O00501 218 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 SPTLC1O15269 473 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 LRCH4O75427 683 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 ZMYND10O75800 440 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 CYBBP04839 570 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 KRT10P13645 584 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 SLC11A1P49279 550 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 TAS2R40P59535 323 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 KLHL38Q2WGJ6 581 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 CEP85LQ5SZL2 805 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 C6orf118Q5T5N4 469 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 OLFML1Q6UWY5 402 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 FAM131BQ86XD5 332 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 DPF3Q92784 378 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms