RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 KLHDC10Q6PID8 442 aa15.22■□□□□ 0.03
BRCA1-223ENST00000494123 H2AFVQ71UI9 128 aa15.22■□□□□ 0.03
BRCA1-223ENST00000494123 BEND5Q7L4P6 421 aa15.22■□□□□ 0.03
BRCA1-223ENST00000494123 MIB1Q86YT6 1006 aa15.22■□□□□ 0.03
BRCA1-223ENST00000494123 TMEM139Q8IV31 216 aa15.22■□□□□ 0.03
BRCA1-223ENST00000494123 ARID3BQ8IVW6 561 aaPredicted RBP15.22■□□□□ 0.03
BRCA1-223ENST00000494123 TTC16Q8NEE8 873 aa15.22■□□□□ 0.03
BRCA1-223ENST00000494123 ASB16Q96NS5 453 aa15.22■□□□□ 0.03
BRCA1-223ENST00000494123 ASB2Q96Q27 587 aa15.22■□□□□ 0.03
BRCA1-223ENST00000494123 THAP2Q9H0W7 228 aa15.22■□□□□ 0.03
BRCA1-223ENST00000494123 SMG9Q9H0W8 520 aaKnown RBP15.22■□□□□ 0.03
BRCA1-223ENST00000494123 TDP1Q9NUW8 608 aa15.22■□□□□ 0.03
BRCA1-223ENST00000494123 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.22■□□□□ 0.03
BRCA1-223ENST00000494123 EPS15L1Q9UBC2 864 aa15.22■□□□□ 0.03
BRCA1-223ENST00000494123 PRKAG3Q9UGI9 489 aa15.22■□□□□ 0.03
BRCA1-223ENST00000494123 HELZP42694 1942 aaKnown RBP15.22■□□□□ 0.03
BRCA1-223ENST00000494123 EIF3CLB5ME19 914 aaKnown RBP15.21■□□□□ 0.03
BRCA1-223ENST00000494123 MDM4O15151 490 aa15.21■□□□□ 0.03
BRCA1-223ENST00000494123 GJB6O95452 261 aa15.21■□□□□ 0.03
BRCA1-223ENST00000494123 FYNP06241 537 aa15.21■□□□□ 0.03
BRCA1-223ENST00000494123 MATKP42679 507 aa15.21■□□□□ 0.03
BRCA1-223ENST00000494123 GPC5P78333 572 aa15.21■□□□□ 0.03
BRCA1-223ENST00000494123 SLC7A9P82251 487 aa15.21■□□□□ 0.03
BRCA1-223ENST00000494123 MTF1Q14872 753 aa15.21■□□□□ 0.03
BRCA1-223ENST00000494123 SYPL2Q5VXT5 272 aa15.21■□□□□ 0.03
BRCA1-223ENST00000494123 POTEHQ6S545 545 aa15.21■□□□□ 0.03
BRCA1-223ENST00000494123 RAD9BQ6WBX8 426 aa15.21■□□□□ 0.03
BRCA1-223ENST00000494123 MTSS1LQ765P7 747 aa15.21■□□□□ 0.03
BRCA1-223ENST00000494123 MCEEQ96PE7 176 aa15.21■□□□□ 0.03
BRCA1-223ENST00000494123 SLC2A13Q96QE2 648 aa15.21■□□□□ 0.03
BRCA1-223ENST00000494123 EIF3CQ99613 913 aaKnown RBP15.21■□□□□ 0.03
BRCA1-223ENST00000494123 ZFP14Q9HCL3 533 aa15.21■□□□□ 0.03
BRCA1-223ENST00000494123 MRPL47Q9HD33 250 aaKnown RBP15.21■□□□□ 0.03
BRCA1-223ENST00000494123 SMPD4Q9NXE4 827 aa15.21■□□□□ 0.03
BRCA1-223ENST00000494123 MARCH2Q9P0N8 246 aa15.21■□□□□ 0.03
BRCA1-223ENST00000494123 STAP1Q9ULZ2 295 aa15.21■□□□□ 0.03
BRCA1-223ENST00000494123 CPQQ9Y646 472 aa15.21■□□□□ 0.03
BRCA1-223ENST00000494123 SPTBN5Q9NRC6 3674 aaKnown RBP15.21■□□□□ 0.03
BRCA1-223ENST00000494123 COL6A3P12111 3177 aa15.21■□□□□ 0.03
BRCA1-223ENST00000494123 SIGLEC16A6NMB1 481 aa15.21■□□□□ 0.02
BRCA1-223ENST00000494123 ZNF263O14978 683 aa15.21■□□□□ 0.02
BRCA1-223ENST00000494123 LCA5LO95447 670 aa15.21■□□□□ 0.02
BRCA1-223ENST00000494123 PRAMEF12O95522 483 aa15.21■□□□□ 0.02
BRCA1-223ENST00000494123 WEE1P30291 646 aa15.21■□□□□ 0.02
BRCA1-223ENST00000494123 NOS2P35228 1153 aa15.21■□□□□ 0.02
BRCA1-223ENST00000494123 MAGEA1P43355 309 aa15.21■□□□□ 0.02
BRCA1-223ENST00000494123 MAMLD1Q13495 774 aa15.21■□□□□ 0.02
BRCA1-223ENST00000494123 PLEKHA7Q6IQ23 1121 aa15.21■□□□□ 0.02
BRCA1-223ENST00000494123 MSANTD2Q6P1R3 559 aa15.21■□□□□ 0.02
BRCA1-223ENST00000494123 ARCQ7LC44 396 aa15.21■□□□□ 0.02
BRCA1-223ENST00000494123 DDX42Q86XP3 938 aaKnown RBP eCLIP15.21■□□□□ 0.02
BRCA1-223ENST00000494123 ADHFE1Q8IWW8 467 aa15.21■□□□□ 0.02
BRCA1-223ENST00000494123 CELF5Q8N6W0 485 aaKnown RBP15.21■□□□□ 0.02
BRCA1-223ENST00000494123 EMC1Q8N766 993 aa15.21■□□□□ 0.02
BRCA1-223ENST00000494123 DQX1Q8TE96 717 aaKnown RBP15.21■□□□□ 0.02
BRCA1-223ENST00000494123 KHSRPQ92945 711 aaKnown RBP eCLIP15.21■□□□□ 0.02
BRCA1-223ENST00000494123 USP13Q92995 863 aaPredicted RBP15.21■□□□□ 0.02
BRCA1-223ENST00000494123 E2F7Q96AV8 911 aa15.21■□□□□ 0.02
BRCA1-223ENST00000494123 SERPINB11Q96P15 392 aa15.21■□□□□ 0.02
BRCA1-223ENST00000494123 PACSIN1Q9BY11 444 aa15.21■□□□□ 0.02
BRCA1-223ENST00000494123 FAM204AQ9H8W3 233 aa15.21■□□□□ 0.02
BRCA1-223ENST00000494123 KIF9Q9HAQ2 790 aa15.21■□□□□ 0.02
BRCA1-223ENST00000494123 SFMBT1Q9UHJ3 866 aa15.21■□□□□ 0.02
BRCA1-223ENST00000494123 TMEM59LQ9UK28 342 aa15.21■□□□□ 0.02
BRCA1-223ENST00000494123 ARHGAP26Q9UNA1 814 aa15.21■□□□□ 0.02
BRCA1-223ENST00000494123 SLC12A8A0AV02 714 aa15.2■□□□□ 0.02
BRCA1-223ENST00000494123 ARHGAP6O43182 974 aa15.2■□□□□ 0.02
BRCA1-223ENST00000494123 TMEM253P0C7T8 217 aa15.2■□□□□ 0.02
BRCA1-223ENST00000494123 IRF1P10914 325 aa15.2■□□□□ 0.02
BRCA1-223ENST00000494123 PDGFRAP16234 1089 aa15.2■□□□□ 0.02
BRCA1-223ENST00000494123 DESP17661 470 aa15.2■□□□□ 0.02
BRCA1-223ENST00000494123 FLT3P36888 993 aa15.2■□□□□ 0.02
BRCA1-223ENST00000494123 VIPR2P41587 438 aa15.2■□□□□ 0.02
BRCA1-223ENST00000494123 SULT1E1P49888 294 aa15.2■□□□□ 0.02
BRCA1-223ENST00000494123 ZDHHC14Q8IZN3 488 aa15.2■□□□□ 0.02
BRCA1-223ENST00000494123 ST13P5Q8NFI4 369 aaPredicted RBP15.2■□□□□ 0.02
BRCA1-223ENST00000494123 JOSD2Q8TAC2 188 aa15.2■□□□□ 0.02
BRCA1-223ENST00000494123 ADAM32Q8TC27 787 aa15.2■□□□□ 0.02
BRCA1-223ENST00000494123 SMOC2Q9H3U7 446 aa15.2■□□□□ 0.02
BRCA1-223ENST00000494123 TRPV4Q9HBA0 871 aa15.2■□□□□ 0.02
BRCA1-223ENST00000494123 RRN3Q9NYV6 651 aa15.2■□□□□ 0.02
BRCA1-223ENST00000494123 CCL26Q9Y258 94 aa15.2■□□□□ 0.02
BRCA1-223ENST00000494123 C5orf42Q9H799 3197 aa15.19■□□□□ 0.02
BRCA1-223ENST00000494123 SYNJ2BP-COX16A0A087WUM0 186 aa15.19■□□□□ 0.02
BRCA1-223ENST00000494123 TCRBV5S1A1TA0A578 114 aa15.19■□□□□ 0.02
BRCA1-223ENST00000494123 TRUB2O95900 331 aaKnown RBP15.19■□□□□ 0.02
BRCA1-223ENST00000494123 HMBSP08397 361 aa15.19■□□□□ 0.02
BRCA1-223ENST00000494123 GPD1P21695 349 aa15.19■□□□□ 0.02
BRCA1-223ENST00000494123 SDC4P31431 198 aa15.19■□□□□ 0.02
BRCA1-223ENST00000494123 GBP1P32455 592 aa15.19■□□□□ 0.02
BRCA1-223ENST00000494123 RFC1P35251 1148 aaPredicted RBP15.19■□□□□ 0.02
BRCA1-223ENST00000494123 KPNA1P52294 538 aaPredicted RBP15.19■□□□□ 0.02
BRCA1-223ENST00000494123 KRT83P78385 493 aa15.19■□□□□ 0.02
BRCA1-223ENST00000494123 COG7P83436 770 aa15.19■□□□□ 0.02
BRCA1-223ENST00000494123 PARM1Q6UWI2 310 aa15.19■□□□□ 0.02
BRCA1-223ENST00000494123 TAC4Q86UU9 113 aa15.19■□□□□ 0.02
BRCA1-223ENST00000494123 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.19■□□□□ 0.02
BRCA1-223ENST00000494123 SH3RF2Q8TEC5 729 aa15.19■□□□□ 0.02
BRCA1-223ENST00000494123 RXFP2Q8WXD0 754 aa15.19■□□□□ 0.02
BRCA1-223ENST00000494123 FGF14Q92915 247 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms