RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 RHOT1Q8IXI2 618 aa11.9□□□□□ -0.5
MCF2L-231ENST00000494043 UBL4BQ8N7F7 174 aa11.9□□□□□ -0.5
MCF2L-231ENST00000494043 KRT35Q92764 455 aa11.9□□□□□ -0.5
MCF2L-231ENST00000494043 PGAP3Q96FM1 320 aaPredicted RBP11.9□□□□□ -0.5
MCF2L-231ENST00000494043 ZNF512Q96ME7 567 aaPredicted RBP11.9□□□□□ -0.5
MCF2L-231ENST00000494043 RAB6CQ9H0N0 254 aa11.9□□□□□ -0.5
MCF2L-231ENST00000494043 SMOC2Q9H3U7 446 aa11.9□□□□□ -0.5
MCF2L-231ENST00000494043 NSUN3Q9H649 340 aaKnown RBP11.9□□□□□ -0.5
MCF2L-231ENST00000494043 FAM204AQ9H8W3 233 aa11.9□□□□□ -0.5
MCF2L-231ENST00000494043 ZNF334Q9HCZ1 680 aaPredicted RBP11.9□□□□□ -0.5
MCF2L-231ENST00000494043 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.9□□□□□ -0.5
MCF2L-231ENST00000494043 ZDHHC7Q9NXF8 308 aa11.9□□□□□ -0.5
MCF2L-231ENST00000494043 TRPM5Q9NZQ8 1165 aa11.9□□□□□ -0.5
MCF2L-231ENST00000494043 SNX12Q9UMY4 172 aa11.9□□□□□ -0.5
MCF2L-231ENST00000494043 MYO7AQ13402 2215 aa11.89□□□□□ -0.51
MCF2L-231ENST00000494043 ZNF840PA6NDX5 716 aa11.89□□□□□ -0.51
MCF2L-231ENST00000494043 M0QYT0 321 aa11.89□□□□□ -0.51
MCF2L-231ENST00000494043 RFPL2O75678 378 aa11.89□□□□□ -0.51
MCF2L-231ENST00000494043 TRUB2O95900 331 aaKnown RBP11.89□□□□□ -0.51
MCF2L-231ENST00000494043 IGLV3-25P01717 112 aa11.89□□□□□ -0.51
MCF2L-231ENST00000494043 RALAP11233 206 aa11.89□□□□□ -0.51
MCF2L-231ENST00000494043 RARGP13631 454 aa11.89□□□□□ -0.51
MCF2L-231ENST00000494043 RDXP35241 583 aaKnown RBP11.89□□□□□ -0.51
MCF2L-231ENST00000494043 PPP3CCP48454 512 aa11.89□□□□□ -0.51
MCF2L-231ENST00000494043 PEX5P50542 639 aa11.89□□□□□ -0.51
MCF2L-231ENST00000494043 DEUP1Q05D60 604 aa11.89□□□□□ -0.51
MCF2L-231ENST00000494043 HADHQ16836 314 aaKnown RBP11.89□□□□□ -0.51
MCF2L-231ENST00000494043 RSRC2Q7L4I2 434 aaKnown RBP11.89□□□□□ -0.51
MCF2L-231ENST00000494043 POLNQ7Z5Q5 900 aa11.89□□□□□ -0.51
MCF2L-231ENST00000494043 TMC8Q8IU68 726 aa11.89□□□□□ -0.51
MCF2L-231ENST00000494043 ADAM32Q8TC27 787 aa11.89□□□□□ -0.51
MCF2L-231ENST00000494043 RNF139Q8WU17 664 aa11.89□□□□□ -0.51
MCF2L-231ENST00000494043 ALG3Q92685 438 aa11.89□□□□□ -0.51
MCF2L-231ENST00000494043 CDK5RAP1Q96SZ6 601 aaKnown RBP11.89□□□□□ -0.51
MCF2L-231ENST00000494043 LRRC3Q9BY71 257 aa11.89□□□□□ -0.51
MCF2L-231ENST00000494043 TTYH1Q9H313 450 aaPredicted RBP11.89□□□□□ -0.51
MCF2L-231ENST00000494043 IL21Q9HBE4 155 aa11.89□□□□□ -0.51
MCF2L-231ENST00000494043 OLA1Q9NTK5 396 aaKnown RBP11.89□□□□□ -0.51
MCF2L-231ENST00000494043 CALCOCO1Q9P1Z2 691 aa11.89□□□□□ -0.51
MCF2L-231ENST00000494043 PCDHA3Q9Y5H8 950 aa11.89□□□□□ -0.51
MCF2L-231ENST00000494043 ZNF638Q14966 1978 aaKnown RBP11.88□□□□□ -0.51
MCF2L-231ENST00000494043 MTCL1Q9Y4B5 1905 aaKnown RBP11.88□□□□□ -0.51
MCF2L-231ENST00000494043 TRIOBPQ9H2D6 2365 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 KCNK3O14649 394 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 IRAK2O43187 625 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 PRPSAP2O60256 369 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 TLR5O60602 858 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 XYLBO75191 536 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 PAPLNO95428 1278 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 F9P00740 461 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 F11P03951 625 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 KRT7P08729 469 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 PRLRP16471 622 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 TCP1P17987 556 aaKnown RBP11.88□□□□□ -0.51
MCF2L-231ENST00000494043 IL1R2P27930 398 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 GTF2F1P35269 517 aaKnown RBP eCLIP11.88□□□□□ -0.512e-6■■■■□ 25.2
MCF2L-231ENST00000494043 GJC1P36383 396 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 TUBP50607 506 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 ATXN1P54253 815 aaKnown RBP11.88□□□□□ -0.51
MCF2L-231ENST00000494043 RBM10P98175 930 aaKnown RBP11.88□□□□□ -0.51
MCF2L-231ENST00000494043 NME3Q13232 169 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 KCNC3Q14003 757 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 PABPC1LQ4VXU2 614 aaKnown RBP11.88□□□□□ -0.51
MCF2L-231ENST00000494043 TCEAL5Q5H9L2 206 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 C10orf120Q5SQS8 335 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 PRPF38BQ5VTL8 546 aaKnown RBP11.88□□□□□ -0.51
MCF2L-231ENST00000494043 TXNRD3NBQ6F5E7 133 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 CYP4V2Q6ZWL3 525 aaPredicted RBP11.88□□□□□ -0.51
MCF2L-231ENST00000494043 TMEM150AQ86TG1 271 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 TADA2BQ86TJ2 420 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 HS6ST3Q8IZP7 471 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 ZNF276Q8N554 614 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 VN1R2Q8NFZ6 395 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 CASP10Q92851 521 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 SERPINB11Q96P15 392 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 PEBP4Q96S96 227 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 OSBPL9Q96SU4 736 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 PSMB7Q99436 277 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 CORO1BQ9BR76 489 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 PRKD2Q9BZL6 878 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 PRDM12Q9H4Q4 367 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 CCSER2Q9H7U1 834 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 ASAH2Q9NR71 780 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 PIGVQ9NUD9 493 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 DZANK1Q9NVP4 752 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 DDIT4Q9NX09 232 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 LMCD1Q9NZU5 365 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 PCSK1NQ9UHG2 260 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 USP18Q9UMW8 372 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.88□□□□□ -0.51
MCF2L-231ENST00000494043 SAR1BQ9Y6B6 198 aa11.88□□□□□ -0.51
MCF2L-231ENST00000494043 SYNJ2BP-COX16A0A087WUM0 186 aa11.87□□□□□ -0.51
MCF2L-231ENST00000494043 SPDYE4A6NLX3 237 aa11.87□□□□□ -0.51
MCF2L-231ENST00000494043 URI1O94763 535 aaPredicted RBP11.87□□□□□ -0.51
MCF2L-231ENST00000494043 FGF19O95750 216 aa11.87□□□□□ -0.51
MCF2L-231ENST00000494043 TBX18O95935 607 aa11.87□□□□□ -0.51
MCF2L-231ENST00000494043 GABRR2P28476 465 aa11.87□□□□□ -0.51
MCF2L-231ENST00000494043 CDC25CP30307 473 aa11.87□□□□□ -0.51
MCF2L-231ENST00000494043 GBP1P32455 592 aa11.87□□□□□ -0.51
MCF2L-231ENST00000494043 CXCR3P49682 368 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms