RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 FANCLQ9NW38 375 aa19.01■□□□□ 0.63
COL9A3-214ENST00000490398 CHURC1-FNTBB4DL54 471 aa19■□□□□ 0.63
COL9A3-214ENST00000490398 MBD3O95983 291 aa19■□□□□ 0.63
COL9A3-214ENST00000490398 GNA15P30679 374 aa19■□□□□ 0.63
COL9A3-214ENST00000490398 FNTBP49356 437 aa19■□□□□ 0.63
COL9A3-214ENST00000490398 SEC13P55735 322 aa19■□□□□ 0.63
COL9A3-214ENST00000490398 KDSRQ06136 332 aa19■□□□□ 0.63
COL9A3-214ENST00000490398 STILQ15468 1287 aa19■□□□□ 0.63
COL9A3-214ENST00000490398 BTBD8Q5XKL5 378 aa19■□□□□ 0.63
COL9A3-214ENST00000490398 SASS6Q6UVJ0 657 aa19■□□□□ 0.63
COL9A3-214ENST00000490398 ENOSF1Q7L5Y1 443 aa19■□□□□ 0.63
COL9A3-214ENST00000490398 ETFBKMTQ8IXQ9 262 aa19■□□□□ 0.63
COL9A3-214ENST00000490398 SIX6OS1Q8N1H7 587 aa19■□□□□ 0.63
COL9A3-214ENST00000490398 WDTC1Q8N5D0 677 aa19■□□□□ 0.63
COL9A3-214ENST00000490398 RPLP0P6Q8NHW5 317 aa19■□□□□ 0.63
COL9A3-214ENST00000490398 MIS12Q9H081 205 aa19■□□□□ 0.63
COL9A3-214ENST00000490398 ZDHHC4Q9NPG8 344 aa19■□□□□ 0.63
COL9A3-214ENST00000490398 SPHK2Q9NRA0 654 aa19■□□□□ 0.63
COL9A3-214ENST00000490398 ZSCAN32Q9NX65 697 aa19■□□□□ 0.63
COL9A3-214ENST00000490398 TJP2Q9UDY2 1190 aa19■□□□□ 0.63
COL9A3-214ENST00000490398 SFMBT1Q9UHJ3 866 aa19■□□□□ 0.63
COL9A3-214ENST00000490398 GPR179Q6PRD1 2367 aa18.99■□□□□ 0.63
COL9A3-214ENST00000490398 SLC12A8A0AV02 714 aa18.99■□□□□ 0.63
COL9A3-214ENST00000490398 FOXN3O00409 490 aaPredicted RBP18.99■□□□□ 0.63
COL9A3-214ENST00000490398 THAP12O43422 761 aa18.99■□□□□ 0.63
COL9A3-214ENST00000490398 LILRB5O75023 590 aa18.99■□□□□ 0.63
COL9A3-214ENST00000490398 PAPSS2O95340 614 aaPredicted RBP18.99■□□□□ 0.63
COL9A3-214ENST00000490398 ADH1CP00326 375 aa18.99■□□□□ 0.63
COL9A3-214ENST00000490398 PXNP49023 591 aaPredicted RBP18.99■□□□□ 0.63
COL9A3-214ENST00000490398 RPL34P49207 117 aaKnown RBP18.99■□□□□ 0.63
COL9A3-214ENST00000490398 KLK7P49862 253 aa18.99■□□□□ 0.63
COL9A3-214ENST00000490398 SRSF5Q13243 272 aaKnown RBP18.99■□□□□ 0.63
COL9A3-214ENST00000490398 KRT31Q15323 416 aa18.99■□□□□ 0.63
COL9A3-214ENST00000490398 EMC10Q5UCC4 262 aa18.99■□□□□ 0.63
COL9A3-214ENST00000490398 HEATR6Q6AI08 1181 aaKnown RBP18.99■□□□□ 0.63
COL9A3-214ENST00000490398 ARHGAP18Q8N392 663 aa18.99■□□□□ 0.63
COL9A3-214ENST00000490398 OTUB2Q96DC9 234 aa18.99■□□□□ 0.63
COL9A3-214ENST00000490398 VPS16Q9H269 839 aa18.99■□□□□ 0.63
COL9A3-214ENST00000490398 CNGB3Q9NQW8 809 aa18.99■□□□□ 0.63
COL9A3-214ENST00000490398 MARCH2Q9P0N8 246 aa18.99■□□□□ 0.63
COL9A3-214ENST00000490398 FHOD1Q9Y613 1164 aa18.99■□□□□ 0.63
COL9A3-214ENST00000490398 MYOFQ9NZM1 2061 aa18.99■□□□□ 0.63
COL9A3-214ENST00000490398 PES1O00541 588 aaKnown RBP18.98■□□□□ 0.63
COL9A3-214ENST00000490398 HOXC11O43248 304 aaPredicted RBP18.98■□□□□ 0.63
COL9A3-214ENST00000490398 FYNP06241 537 aa18.98■□□□□ 0.63
COL9A3-214ENST00000490398 EEF1GP26641 437 aaKnown RBP18.98■□□□□ 0.63
COL9A3-214ENST00000490398 CORO1AP31146 461 aaKnown RBP18.98■□□□□ 0.63
COL9A3-214ENST00000490398 CLCN1P35523 988 aa18.98■□□□□ 0.63
COL9A3-214ENST00000490398 GAD2Q05329 585 aa18.98■□□□□ 0.63
COL9A3-214ENST00000490398 NCAPHQ15003 741 aa18.98■□□□□ 0.63
COL9A3-214ENST00000490398 STX1AQ16623 288 aa18.98■□□□□ 0.63
COL9A3-214ENST00000490398 ANO4Q32M45 955 aa18.98■□□□□ 0.63
COL9A3-214ENST00000490398 TPGS1Q6ZTW0 290 aa18.98■□□□□ 0.63
COL9A3-214ENST00000490398 RSRC2Q7L4I2 434 aaKnown RBP18.98■□□□□ 0.63
COL9A3-214ENST00000490398 FMNL3Q8IVF7 1028 aa18.98■□□□□ 0.63
COL9A3-214ENST00000490398 SCUBE3Q8IX30 993 aa18.98■□□□□ 0.63
COL9A3-214ENST00000490398 SCML4Q8N228 414 aa18.98■□□□□ 0.63
COL9A3-214ENST00000490398 SUMF1Q8NBK3 374 aa18.98■□□□□ 0.63
COL9A3-214ENST00000490398 BHMTQ93088 406 aa18.98■□□□□ 0.63
COL9A3-214ENST00000490398 HSFY1Q96LI6 401 aa18.98■□□□□ 0.63
COL9A3-214ENST00000490398 PNKPQ96T60 521 aa18.98■□□□□ 0.63
COL9A3-214ENST00000490398 LSM14BQ9BX40 385 aaKnown RBP18.98■□□□□ 0.63
COL9A3-214ENST00000490398 HSD3B7Q9H2F3 369 aa18.98■□□□□ 0.63
COL9A3-214ENST00000490398 ANO10Q9NW15 660 aa18.98■□□□□ 0.63
COL9A3-214ENST00000490398 LSM7Q9UK45 103 aaKnown RBP18.98■□□□□ 0.63
COL9A3-214ENST00000490398 AGO1Q9UL18 857 aaKnown RBP18.98■□□□□ 0.63
COL9A3-214ENST00000490398 PCDHGA2Q9Y5H1 932 aa18.98■□□□□ 0.63
COL9A3-214ENST00000490398 MSI1O43347 362 aaKnown RBP18.97■□□□□ 0.63
COL9A3-214ENST00000490398 TULP3O75386 442 aa18.97■□□□□ 0.63
COL9A3-214ENST00000490398 KAT7O95251 611 aa18.97■□□□□ 0.63
COL9A3-214ENST00000490398 TYRO3Q06418 890 aa18.97■□□□□ 0.63
COL9A3-214ENST00000490398 C2orf27AQ580R0 203 aa18.97■□□□□ 0.63
COL9A3-214ENST00000490398 KLHDC7AQ5VTJ3 777 aa18.97■□□□□ 0.63
COL9A3-214ENST00000490398 TADA2BQ86TJ2 420 aa18.97■□□□□ 0.63
COL9A3-214ENST00000490398 SLC47A2Q86VL8 602 aa18.97■□□□□ 0.63
COL9A3-214ENST00000490398 PASD1Q8IV76 773 aa18.97■□□□□ 0.63
COL9A3-214ENST00000490398 USP33Q8TEY7 942 aa18.97■□□□□ 0.63
COL9A3-214ENST00000490398 PIWIL1Q96J94 861 aaKnown RBP18.97■□□□□ 0.63
COL9A3-214ENST00000490398 NAA15Q9BXJ9 866 aaKnown RBP18.97■□□□□ 0.63
COL9A3-214ENST00000490398 SLC4A5Q9BY07 1137 aa18.97■□□□□ 0.63
COL9A3-214ENST00000490398 ARHGEF4Q9NR80 690 aa18.97■□□□□ 0.63
COL9A3-214ENST00000490398 PLK2Q9NYY3 685 aa18.97■□□□□ 0.63
COL9A3-214ENST00000490398 HCN2Q9UL51 889 aa18.97■□□□□ 0.63
COL9A3-214ENST00000490398 ATG2BQ96BY7 2078 aa18.97■□□□□ 0.63
COL9A3-214ENST00000490398 FAM170AA1A519 330 aa18.96■□□□□ 0.63
COL9A3-214ENST00000490398 NEDD8-MDP1E9PL57 170 aa18.96■□□□□ 0.63
COL9A3-214ENST00000490398 PAPSS1O43252 624 aaPredicted RBP18.96■□□□□ 0.63
COL9A3-214ENST00000490398 LMNAP02545 664 aaKnown RBP18.96■□□□□ 0.63
COL9A3-214ENST00000490398 HNRNPLP14866 589 aaKnown RBP eCLIP18.96■□□□□ 0.63
COL9A3-214ENST00000490398 COG7P83436 770 aa18.96■□□□□ 0.63
COL9A3-214ENST00000490398 GOLGA8FQ08AF8 430 aa18.96■□□□□ 0.63
COL9A3-214ENST00000490398 GOLGA8DPQ0D2H9 430 aa18.96■□□□□ 0.63
COL9A3-214ENST00000490398 FBXO43Q4G163 708 aa18.96■□□□□ 0.63
COL9A3-214ENST00000490398 CAVIN1Q6NZI2 390 aaKnown RBP18.96■□□□□ 0.63
COL9A3-214ENST00000490398 ZC3H14Q6PJT7 736 aaKnown RBP18.96■□□□□ 0.63
COL9A3-214ENST00000490398 TOGARAM2Q6ZUX3 1019 aa18.96■□□□□ 0.63
COL9A3-214ENST00000490398 DENND1CQ8IV53 801 aa18.96■□□□□ 0.63
COL9A3-214ENST00000490398 FAM71AQ8IYT1 594 aa18.96■□□□□ 0.63
COL9A3-214ENST00000490398 ATRIPQ8WXE1 791 aa18.96■□□□□ 0.63
COL9A3-214ENST00000490398 IRGQQ8WZA9 623 aa18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms