RNA–Protein interactions for RNA: ENST00000490163.5

UBXN4-208, Transcript of UBX domain protein 4, humanhuman

TSL 2

Gene UBXN4, Length 3,394 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-208ENST00000490163 RILPL1Q5EBL4 403 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 FAM160B1Q5W0V3 765 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 DPY19L2P1Q6NXN4 242 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 LINC00696Q6ZRV3 163 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 LRRC55Q6ZSA7 311 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 BEND4Q6ZU67 534 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 EXOC3L1Q86VI1 746 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 GOT1L1Q8NHS2 421 aaPredicted RBP3.24□□□□□ -1.89
UBXN4-208ENST00000490163 SNRNP40Q96DI7 357 aaKnown RBP3.24□□□□□ -1.89
UBXN4-208ENST00000490163 ELP4Q96EB1 424 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 RNF125Q96EQ8 232 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 CCDC120Q96HB5 630 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 OSBPL9Q96SU4 736 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 HERC2P3Q9BVR0 1158 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 GATA5Q9BWX5 397 aaPredicted RBP3.24□□□□□ -1.89
UBXN4-208ENST00000490163 VPS33BQ9H267 617 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 RABEP2Q9H5N1 569 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 NCKIPSDQ9NZQ3 722 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 XPR1Q9UBH6 696 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 MAFFQ9ULX9 164 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 PLEKHH2Q8IVE3 1493 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 POLR1AO95602 1720 aaPredicted RBP3.24□□□□□ -1.89
UBXN4-208ENST00000490163 SPHKAPQ2M3C7 1700 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 PLCH2O75038 1416 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 PTPRGP23470 1445 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 C2orf78A6NCI8 922 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 POLRMTO00411 1230 aaKnown RBP3.24□□□□□ -1.89
UBXN4-208ENST00000490163 TAF5LO75529 589 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 PIAS2O75928 621 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 AHSGP02765 367 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 CNTFP26441 200 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 PNPLA4P41247 253 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 NDUFV1P49821 464 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 CDK17Q00537 523 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 SLC13A2Q13183 592 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 WTAPQ15007 396 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 SURF1Q15526 300 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 ARHGAP15Q53QZ3 475 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 DEPDC1Q5TB30 811 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 C17orf99Q6UX52 265 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 RNF44Q7L0R7 432 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 MRPL43Q8N983 215 aaKnown RBP3.24□□□□□ -1.89
UBXN4-208ENST00000490163 ZFAND2BQ8WV99 257 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 ATRIPQ8WXE1 791 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 APOPT1Q96IL0 206 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 COG8Q96MW5 612 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 XPO4Q9C0E2 1151 aaKnown RBP3.24□□□□□ -1.89
UBXN4-208ENST00000490163 PCDHAC1Q9H158 963 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 LTB4R2Q9NPC1 389 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 KCND2Q9NZV8 630 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 APPL1Q9UKG1 709 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 SLC4A7Q9Y6M7 1214 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 E9PCH4 1651 aa3.24□□□□□ -1.89
UBXN4-208ENST00000490163 FGD6Q6ZV73 1430 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 SYCP2Q9BX26 1530 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 A0A0G2JNJ9 132 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 DNPH1O43598 174 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 SYNCRIPO60506 623 aaKnown RBP3.23□□□□□ -1.89
UBXN4-208ENST00000490163 TRIM13O60858 407 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 UBL4AP11441 157 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 GYPEP15421 78 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 ETV4P43268 484 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 MTNR1AP48039 350 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 NAGLUP54802 743 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 CD83Q01151 205 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 TLE3Q04726 772 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 TRIM28Q13263 835 aaKnown RBP3.23□□□□□ -1.89
UBXN4-208ENST00000490163 TNFAIP1Q13829 316 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 AAK1Q2M2I8 961 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 CCDC186Q7Z3E2 898 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 LIX1LQ8IVB5 337 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 CEP57L1Q8IYX8 460 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 RABGGTAQ92696 567 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 MUL1Q969V5 352 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 LRIG1Q96JA1 1093 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 XRN2Q9H0D6 950 aaKnown RBP eCLIP3.23□□□□□ -1.89
UBXN4-208ENST00000490163 ZCWPW1Q9H0M4 648 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 CTTNBP2NLQ9P2B4 639 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 CFAP97Q9P2B7 532 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 SAE1Q9UBE0 346 aaPredicted RBP3.23□□□□□ -1.89
UBXN4-208ENST00000490163 CRNNQ9UBG3 495 aaPredicted RBP3.23□□□□□ -1.89
UBXN4-208ENST00000490163 ZNF212Q9UDV6 495 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 Q9UFV3 132 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 MLH3Q9UHC1 1453 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 RTEL1-TNFRSF6BF6WH68 1400 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 ATP7AQ04656 1500 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 H3BUI4 141 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 SPTLC2O15270 562 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 CD3EAPO15446 510 aaKnown RBP3.23□□□□□ -1.89
UBXN4-208ENST00000490163 SEC14L2O76054 403 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 RECQL4O94761 1208 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 TMIGD3P0DMS9 266 aaPredicted RBP3.23□□□□□ -1.89
UBXN4-208ENST00000490163 CASTP20810 708 aaKnown RBP3.23□□□□□ -1.89
UBXN4-208ENST00000490163 KCNA5P22460 613 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 ECHS1P30084 290 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 ACTN2P35609 894 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 GSK3AP49840 483 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 ADCY7P51828 1080 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 FOXL2P58012 376 aa3.23□□□□□ -1.89
UBXN4-208ENST00000490163 TUBB2AQ13885 445 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms