RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 hCG_1818297A0A087WSY0 165 aa22.55■■□□□ 1.2
SMC4-221ENST00000489573 SYNJ2BP-COX16A0A087WUM0 186 aa22.55■■□□□ 1.2
SMC4-221ENST00000489573 NME3Q13232 169 aa22.55■■□□□ 1.2
SMC4-221ENST00000489573 MTMR3Q13615 1198 aa22.55■■□□□ 1.2
SMC4-221ENST00000489573 SIX1Q15475 284 aaPredicted RBP22.55■■□□□ 1.2
SMC4-221ENST00000489573 ERMARDQ5T6L9 678 aa22.55■■□□□ 1.2
SMC4-221ENST00000489573 FAM131BQ86XD5 332 aa22.55■■□□□ 1.2
SMC4-221ENST00000489573 KLHL7Q8IXQ5 586 aa22.55■■□□□ 1.2
SMC4-221ENST00000489573 ZDHHC14Q8IZN3 488 aa22.55■■□□□ 1.2
SMC4-221ENST00000489573 DQX1Q8TE96 717 aaKnown RBP22.55■■□□□ 1.2
SMC4-221ENST00000489573 C17orf80Q9BSJ5 609 aa22.55■■□□□ 1.2
SMC4-221ENST00000489573 HEMGNQ9BXL5 484 aa22.55■■□□□ 1.2
SMC4-221ENST00000489573 NMUR1Q9HB89 426 aa22.55■■□□□ 1.2
SMC4-221ENST00000489573 GPATCH2LQ9NWQ4 482 aa22.55■■□□□ 1.2
SMC4-221ENST00000489573 DDIT4Q9NX09 232 aa22.55■■□□□ 1.2
SMC4-221ENST00000489573 COX16Q9P0S2 106 aa22.55■■□□□ 1.2
SMC4-221ENST00000489573 YIPF1Q9Y548 306 aa22.55■■□□□ 1.2
SMC4-221ENST00000489573 PLXNA4Q9HCM2 1894 aa22.55■■□□□ 1.2
SMC4-221ENST00000489573 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP22.55■■□□□ 1.2
SMC4-221ENST00000489573 C5orf67F2Z3F1 127 aa22.55■■□□□ 1.2
SMC4-221ENST00000489573 CXCL14O95715 111 aa22.55■■□□□ 1.2
SMC4-221ENST00000489573 CNPP09543 421 aaKnown RBP22.55■■□□□ 1.2
SMC4-221ENST00000489573 RHOXF2BP0C7M4 288 aa22.55■■□□□ 1.2
SMC4-221ENST00000489573 MYOGP15173 224 aa22.55■■□□□ 1.2
SMC4-221ENST00000489573 ELF1P32519 619 aa22.55■■□□□ 1.2
SMC4-221ENST00000489573 ARSEP51690 589 aa22.55■■□□□ 1.2
SMC4-221ENST00000489573 CDH6P55285 790 aa22.55■■□□□ 1.2
SMC4-221ENST00000489573 KLF1Q13351 362 aaPredicted RBP22.55■■□□□ 1.2
SMC4-221ENST00000489573 KRT81Q14533 505 aa22.55■■□□□ 1.2
SMC4-221ENST00000489573 PDK2Q15119 407 aa22.55■■□□□ 1.2
SMC4-221ENST00000489573 TAZQ16635 292 aa22.55■■□□□ 1.2
SMC4-221ENST00000489573 FAM109BQ6ICB4 259 aaPredicted RBP22.55■■□□□ 1.2
SMC4-221ENST00000489573 TAC4Q86UU9 113 aa22.55■■□□□ 1.2
SMC4-221ENST00000489573 GPR161Q8N6U8 529 aaKnown RBP22.55■■□□□ 1.2
SMC4-221ENST00000489573 ADAM32Q8TC27 787 aa22.55■■□□□ 1.2
SMC4-221ENST00000489573 TCF25Q9BQ70 676 aa22.55■■□□□ 1.2
SMC4-221ENST00000489573 RHOXF2Q9BQY4 288 aa22.55■■□□□ 1.2
SMC4-221ENST00000489573 TTLL2Q9BWV7 592 aa22.55■■□□□ 1.2
SMC4-221ENST00000489573 ALG13Q9NP73 1137 aaKnown RBP22.55■■□□□ 1.2
SMC4-221ENST00000489573 PIGVQ9NUD9 493 aa22.55■■□□□ 1.2
SMC4-221ENST00000489573 EFR3BQ9Y2G0 817 aa22.55■■□□□ 1.2
SMC4-221ENST00000489573 GRXCR1A8MXD5 290 aa22.54■■□□□ 1.2
SMC4-221ENST00000489573 PHF2O75151 1096 aa22.54■■□□□ 1.2
SMC4-221ENST00000489573 F9P00740 461 aa22.54■■□□□ 1.2
SMC4-221ENST00000489573 KRT10P13645 584 aa22.54■■□□□ 1.2
SMC4-221ENST00000489573 PGFP49763 221 aa22.54■■□□□ 1.2
SMC4-221ENST00000489573 UBE3AQ05086 875 aa22.54■■□□□ 1.2
SMC4-221ENST00000489573 ZC3H12AQ5D1E8 599 aaKnown RBP22.54■■□□□ 1.2
SMC4-221ENST00000489573 KAZNQ674X7 775 aa22.54■■□□□ 1.2
SMC4-221ENST00000489573 C8orf74Q6P047 294 aa22.54■■□□□ 1.2
SMC4-221ENST00000489573 MAP7D3Q8IWC1 876 aa22.54■■□□□ 1.2
SMC4-221ENST00000489573 TCEAL8Q8IYN2 117 aa22.54■■□□□ 1.2
SMC4-221ENST00000489573 CCDC185Q8N715 623 aa22.54■■□□□ 1.2
SMC4-221ENST00000489573 PRELID2Q8N945 189 aa22.54■■□□□ 1.2
SMC4-221ENST00000489573 DDX47Q9H0S4 455 aaKnown RBP22.54■■□□□ 1.2
SMC4-221ENST00000489573 ENTPD7Q9NQZ7 604 aa22.54■■□□□ 1.2
SMC4-221ENST00000489573 FZD10Q9ULW2 581 aa22.54■■□□□ 1.2
SMC4-221ENST00000489573 AP4E1Q9UPM8 1137 aa22.54■■□□□ 1.2
SMC4-221ENST00000489573 PRRG1O14668 218 aa22.53■■□□□ 1.2
SMC4-221ENST00000489573 ARHGEF15O94989 841 aa22.53■■□□□ 1.2
SMC4-221ENST00000489573 TJP3O95049 919 aa22.53■■□□□ 1.2
SMC4-221ENST00000489573 RB1P06400 928 aa22.53■■□□□ 1.2
SMC4-221ENST00000489573 CD48P09326 243 aa22.53■■□□□ 1.2
SMC4-221ENST00000489573 GBP1P32455 592 aa22.53■■□□□ 1.2
SMC4-221ENST00000489573 ALDH1A3P47895 512 aa22.53■■□□□ 1.2
SMC4-221ENST00000489573 PSEN1P49768 467 aa22.53■■□□□ 1.2
SMC4-221ENST00000489573 TAF10Q12962 218 aa22.53■■□□□ 1.2
SMC4-221ENST00000489573 CYP1B1Q16678 543 aa22.53■■□□□ 1.2
SMC4-221ENST00000489573 GLE1Q53GS7 698 aaKnown RBP22.53■■□□□ 1.2
SMC4-221ENST00000489573 PRPF38BQ5VTL8 546 aaKnown RBP22.53■■□□□ 1.2
SMC4-221ENST00000489573 SND1Q7KZF4 910 aaKnown RBP eCLIP22.53■■□□□ 1.26e-9■■■■■ 32.8
SMC4-221ENST00000489573 PSTKQ8IV42 348 aaKnown RBP22.53■■□□□ 1.2
SMC4-221ENST00000489573 SPPL3Q8TCT6 385 aa22.53■■□□□ 1.2
SMC4-221ENST00000489573 RNF139Q8WU17 664 aa22.53■■□□□ 1.2
SMC4-221ENST00000489573 LRRC1Q9BTT6 524 aa22.53■■□□□ 1.2
SMC4-221ENST00000489573 CALN1Q9BXU9 219 aa22.53■■□□□ 1.2
SMC4-221ENST00000489573 EPC1Q9H2F5 836 aa22.53■■□□□ 1.2
SMC4-221ENST00000489573 SMOC2Q9H3U7 446 aa22.53■■□□□ 1.2
SMC4-221ENST00000489573 SLITRK6Q9H5Y7 841 aa22.53■■□□□ 1.2
SMC4-221ENST00000489573 WDR6Q9NNW5 1121 aaKnown RBP22.53■■□□□ 1.2
SMC4-221ENST00000489573 TLR8Q9NR97 1041 aaKnown RBP22.53■■□□□ 1.2
SMC4-221ENST00000489573 OSER1Q9NX31 292 aa22.53■■□□□ 1.2
SMC4-221ENST00000489573 IRAK3Q9Y616 596 aa22.53■■□□□ 1.2
SMC4-221ENST00000489573 DYNC1I1O14576 645 aa22.52■■□□□ 1.2
SMC4-221ENST00000489573 IGLV3-25P01717 112 aa22.52■■□□□ 1.2
SMC4-221ENST00000489573 ADH1AP07327 375 aa22.52■■□□□ 1.2
SMC4-221ENST00000489573 CA3P07451 260 aa22.52■■□□□ 1.2
SMC4-221ENST00000489573 CSH1P0DML2 217 aa22.52■■□□□ 1.2
SMC4-221ENST00000489573 CSH2P0DML3 217 aa22.52■■□□□ 1.2
SMC4-221ENST00000489573 AIF1P55008 147 aa22.52■■□□□ 1.2
SMC4-221ENST00000489573 ERVFC1P60507 584 aa22.52■■□□□ 1.2
SMC4-221ENST00000489573 DPYSL3Q14195 570 aa22.52■■□□□ 1.2
SMC4-221ENST00000489573 DPYSL2Q16555 572 aa22.52■■□□□ 1.2
SMC4-221ENST00000489573 CA9Q16790 459 aa22.52■■□□□ 1.2
SMC4-221ENST00000489573 VSIG1Q86XK7 387 aa22.52■■□□□ 1.2
SMC4-221ENST00000489573 C12orf50Q8NA57 414 aaPredicted RBP22.52■■□□□ 1.2
SMC4-221ENST00000489573 FAM71BQ8TC56 605 aa22.52■■□□□ 1.2
SMC4-221ENST00000489573 POF1BQ8WVV4 589 aa22.52■■□□□ 1.2
SMC4-221ENST00000489573 MAGOHBQ96A72 148 aaKnown RBP22.52■■□□□ 1.2
SMC4-221ENST00000489573 NTAN1Q96AB6 310 aa22.52■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms