RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 PNPLA8Q9NP80 782 aa13.08□□□□□ -0.32
CPSF3-204ENST00000489403 FSCN3Q9NQT6 498 aa13.08□□□□□ -0.32
CPSF3-204ENST00000489403 MARK1Q9P0L2 795 aa13.08□□□□□ -0.32
CPSF3-204ENST00000489403 LSM7Q9UK45 103 aaKnown RBP13.08□□□□□ -0.32
CPSF3-204ENST00000489403 NUDT5Q9UKK9 219 aa13.08□□□□□ -0.32
CPSF3-204ENST00000489403 TRAF3IP3Q9Y228 551 aa13.08□□□□□ -0.32
CPSF3-204ENST00000489403 FRMD4BQ9Y2L6 1034 aa13.08□□□□□ -0.32
CPSF3-204ENST00000489403 PCDH15Q96QU1 1955 aa13.08□□□□□ -0.32
CPSF3-204ENST00000489403 WDFY3Q8IZQ1 3526 aa13.08□□□□□ -0.32
CPSF3-204ENST00000489403 PI4KAP42356 2102 aa13.07□□□□□ -0.32
CPSF3-204ENST00000489403 ASCC3Q8N3C0 2202 aaKnown RBP13.07□□□□□ -0.32
CPSF3-204ENST00000489403 IGHV1OR15-9A0A0B4J2B8 117 aa13.07□□□□□ -0.32
CPSF3-204ENST00000489403 A0A1W2PQH9 124 aa13.07□□□□□ -0.32
CPSF3-204ENST00000489403 PRRT4C9JH25 899 aa13.07□□□□□ -0.32
CPSF3-204ENST00000489403 CALUO43852 315 aaPredicted RBP13.07□□□□□ -0.32
CPSF3-204ENST00000489403 HSP90AA1P07900 732 aaKnown RBP13.07□□□□□ -0.32
CPSF3-204ENST00000489403 TRIM49P0CI25 452 aa13.07□□□□□ -0.32
CPSF3-204ENST00000489403 TRIM49CP0CI26 452 aa13.07□□□□□ -0.32
CPSF3-204ENST00000489403 RARGP13631 454 aa13.07□□□□□ -0.32
CPSF3-204ENST00000489403 NDUFV2P19404 249 aa13.07□□□□□ -0.32
CPSF3-204ENST00000489403 HOXD12P35452 270 aa13.07□□□□□ -0.32
CPSF3-204ENST00000489403 DPP6P42658 865 aa13.07□□□□□ -0.32
CPSF3-204ENST00000489403 VAMP7P51809 220 aa13.07□□□□□ -0.32
CPSF3-204ENST00000489403 GOLGA8FQ08AF8 430 aa13.07□□□□□ -0.32
CPSF3-204ENST00000489403 GOLGA8DPQ0D2H9 430 aa13.07□□□□□ -0.32
CPSF3-204ENST00000489403 KIAA1211LQ6NV74 962 aa13.07□□□□□ -0.32
CPSF3-204ENST00000489403 SLC36A4Q6YBV0 504 aa13.07□□□□□ -0.32
CPSF3-204ENST00000489403 Q6ZNB5 142 aa13.07□□□□□ -0.32
CPSF3-204ENST00000489403 CHPFQ8IZ52 775 aa13.07□□□□□ -0.32
CPSF3-204ENST00000489403 ERLEC1Q96DZ1 483 aa13.07□□□□□ -0.32
CPSF3-204ENST00000489403 CYFIP2Q96F07 1278 aa13.07□□□□□ -0.32
CPSF3-204ENST00000489403 P2RY11Q96G91 374 aa13.07□□□□□ -0.32
CPSF3-204ENST00000489403 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.07□□□□□ -0.32
CPSF3-204ENST00000489403 HPSEQ9Y251 543 aa13.07□□□□□ -0.32
CPSF3-204ENST00000489403 PCDHA5Q9Y5H7 936 aa13.07□□□□□ -0.32
CPSF3-204ENST00000489403 MAPK13O15264 365 aa13.06□□□□□ -0.32
CPSF3-204ENST00000489403 CILPO75339 1184 aa13.06□□□□□ -0.32
CPSF3-204ENST00000489403 CFIP05156 583 aa13.06□□□□□ -0.32
CPSF3-204ENST00000489403 MYL1P05976 194 aa13.06□□□□□ -0.32
CPSF3-204ENST00000489403 CISD3P0C7P0 127 aa13.06□□□□□ -0.32
CPSF3-204ENST00000489403 PRR29P0C7W0 189 aa13.06□□□□□ -0.32
CPSF3-204ENST00000489403 TRIM21P19474 475 aaKnown RBP13.06□□□□□ -0.32
CPSF3-204ENST00000489403 NR2F2P24468 414 aa13.06□□□□□ -0.32
CPSF3-204ENST00000489403 GCLMP48507 274 aa13.06□□□□□ -0.32
CPSF3-204ENST00000489403 DGKGP49619 791 aa13.06□□□□□ -0.32
CPSF3-204ENST00000489403 ZNF33AQ06730 810 aa13.06□□□□□ -0.32
CPSF3-204ENST00000489403 PPP3CAQ08209 521 aa13.06□□□□□ -0.32
CPSF3-204ENST00000489403 DUOXA1Q1HG43 343 aa13.06□□□□□ -0.32
CPSF3-204ENST00000489403 KLHDC10Q6PID8 442 aa13.06□□□□□ -0.32
CPSF3-204ENST00000489403 SLC41A1Q8IVJ1 513 aa13.06□□□□□ -0.32
CPSF3-204ENST00000489403 TAS1R2Q8TE23 839 aa13.06□□□□□ -0.32
CPSF3-204ENST00000489403 IPO4Q8TEX9 1081 aaKnown RBP13.06□□□□□ -0.32
CPSF3-204ENST00000489403 GABRG3Q99928 467 aa13.06□□□□□ -0.32
CPSF3-204ENST00000489403 NT5C1AQ9BXI3 368 aa13.06□□□□□ -0.32
CPSF3-204ENST00000489403 ADAM33Q9BZ11 813 aa13.06□□□□□ -0.32
CPSF3-204ENST00000489403 IMPG2Q9BZV3 1241 aa13.06□□□□□ -0.32
CPSF3-204ENST00000489403 NIF3L1Q9GZT8 377 aa13.06□□□□□ -0.32
CPSF3-204ENST00000489403 CD93Q9NPY3 652 aa13.06□□□□□ -0.32
CPSF3-204ENST00000489403 WDR35Q9P2L0 1181 aa13.06□□□□□ -0.32
CPSF3-204ENST00000489403 USP25Q9UHP3 1055 aa13.06□□□□□ -0.32
CPSF3-204ENST00000489403 CYP8B1Q9UNU6 501 aa13.06□□□□□ -0.32
CPSF3-204ENST00000489403 RAD54BQ9Y620 910 aa13.06□□□□□ -0.32
CPSF3-204ENST00000489403 ZNF217O75362 1048 aa13.05□□□□□ -0.32
CPSF3-204ENST00000489403 STC2O76061 302 aa13.05□□□□□ -0.32
CPSF3-204ENST00000489403 RHOBTB3O94955 611 aa13.05□□□□□ -0.32
CPSF3-204ENST00000489403 CD58P19256 250 aa13.05□□□□□ -0.32
CPSF3-204ENST00000489403 CMA1P23946 247 aa13.05□□□□□ -0.32
CPSF3-204ENST00000489403 PLA2G4AP47712 749 aa13.05□□□□□ -0.32
CPSF3-204ENST00000489403 KIF11P52732 1056 aa13.05□□□□□ -0.32
CPSF3-204ENST00000489403 SEMA3BQ13214 749 aa13.05□□□□□ -0.32
CPSF3-204ENST00000489403 NFIL3Q16649 462 aa13.05□□□□□ -0.32
CPSF3-204ENST00000489403 PPP1R26Q5T8A7 1209 aaPredicted RBP13.05□□□□□ -0.32
CPSF3-204ENST00000489403 SDE2Q6IQ49 451 aa13.05□□□□□ -0.32
CPSF3-204ENST00000489403 INTS8Q75QN2 995 aaKnown RBP13.05□□□□□ -0.32
CPSF3-204ENST00000489403 CCDC186Q7Z3E2 898 aa13.05□□□□□ -0.32
CPSF3-204ENST00000489403 SCD5Q86SK9 330 aa13.05□□□□□ -0.32
CPSF3-204ENST00000489403 PIP4P1Q86T03 277 aa13.05□□□□□ -0.32
CPSF3-204ENST00000489403 SPRYD3Q8NCJ5 442 aa13.05□□□□□ -0.32
CPSF3-204ENST00000489403 CEP76Q8TAP6 659 aa13.05□□□□□ -0.32
CPSF3-204ENST00000489403 BHMTQ93088 406 aa13.05□□□□□ -0.32
CPSF3-204ENST00000489403 SCNM1Q9BWG6 230 aa13.05□□□□□ -0.32
CPSF3-204ENST00000489403 GTPBP2Q9BX10 602 aaKnown RBP13.05□□□□□ -0.32
CPSF3-204ENST00000489403 SLC6A17Q9H1V8 727 aa13.05□□□□□ -0.32
CPSF3-204ENST00000489403 SLC32A1Q9H598 525 aa13.05□□□□□ -0.32
CPSF3-204ENST00000489403 MMRN2Q9H8L6 949 aa13.05□□□□□ -0.32
CPSF3-204ENST00000489403 CYP3A43Q9HB55 503 aa13.05□□□□□ -0.32
CPSF3-204ENST00000489403 CAPN10Q9HC96 672 aa13.05□□□□□ -0.32
CPSF3-204ENST00000489403 CACNA2D2Q9NY47 1150 aa13.05□□□□□ -0.32
CPSF3-204ENST00000489403 PLK2Q9NYY3 685 aa13.05□□□□□ -0.32
CPSF3-204ENST00000489403 DNMT3LQ9UJW3 386 aa13.05□□□□□ -0.32
CPSF3-204ENST00000489403 NAGPAQ9UK23 515 aa13.05□□□□□ -0.32
CPSF3-204ENST00000489403 ZMIZ1Q9ULJ6 1067 aa13.05□□□□□ -0.32
CPSF3-204ENST00000489403 SLC6A14Q9UN76 642 aa13.05□□□□□ -0.32
CPSF3-204ENST00000489403 USP3Q9Y6I4 520 aa13.05□□□□□ -0.32
CPSF3-204ENST00000489403 UPK3BL1B0FP48 263 aa13.04□□□□□ -0.32
CPSF3-204ENST00000489403 WASH3PC4AMC7 463 aa13.04□□□□□ -0.32
CPSF3-204ENST00000489403 UPK3BL2E5RIL1 263 aa13.04□□□□□ -0.32
CPSF3-204ENST00000489403 GFRA2O00451 464 aa13.04□□□□□ -0.32
CPSF3-204ENST00000489403 KIF20AO95235 890 aa13.04□□□□□ -0.32
CPSF3-204ENST00000489403 SERPINF2P08697 491 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms