RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 RBBP8NLQ8NC74 664 aaPredicted RBP17.91■□□□□ 0.46
VIM-205ENST00000485947 ZBTB44Q8NCP5 570 aa17.91■□□□□ 0.46
VIM-205ENST00000485947 CCDC26Q8TAB7 109 aa17.91■□□□□ 0.46
VIM-205ENST00000485947 EPS8L1Q8TE68 723 aa17.91■□□□□ 0.46
VIM-205ENST00000485947 ATP2A3Q93084 1043 aa17.91■□□□□ 0.46
VIM-205ENST00000485947 ZFYVE19Q96K21 471 aa17.91■□□□□ 0.46
VIM-205ENST00000485947 MED10Q9BTT4 135 aa17.91■□□□□ 0.46
VIM-205ENST00000485947 NT5C1AQ9BXI3 368 aa17.91■□□□□ 0.46
VIM-205ENST00000485947 SMG9Q9H0W8 520 aaKnown RBP17.91■□□□□ 0.46
VIM-205ENST00000485947 SDCBP2Q9H190 292 aa17.91■□□□□ 0.46
VIM-205ENST00000485947 FBXO44Q9H4M3 255 aa17.91■□□□□ 0.46
VIM-205ENST00000485947 PNPLA8Q9NP80 782 aa17.91■□□□□ 0.46
VIM-205ENST00000485947 ZSCAN32Q9NX65 697 aa17.91■□□□□ 0.46
VIM-205ENST00000485947 DENND4CQ5VZ89 1909 aa17.91■□□□□ 0.46
VIM-205ENST00000485947 NCOR2Q9Y618 2525 aa17.91■□□□□ 0.46
VIM-205ENST00000485947 CACNA1IQ9P0X4 2223 aa17.9■□□□□ 0.46
VIM-205ENST00000485947 TRDMT1O14717 391 aaKnown RBP17.9■□□□□ 0.46
VIM-205ENST00000485947 SLC9A3R1O14745 358 aaPredicted RBP17.9■□□□□ 0.46
VIM-205ENST00000485947 ZNF132P52740 706 aa17.9■□□□□ 0.46
VIM-205ENST00000485947 USP46P62068 366 aa17.9■□□□□ 0.46
VIM-205ENST00000485947 CSTF1Q05048 431 aaKnown RBP17.9■□□□□ 0.46
VIM-205ENST00000485947 TAF10Q12962 218 aa17.9■□□□□ 0.46
VIM-205ENST00000485947 SPA17Q15506 151 aa17.9■□□□□ 0.46
VIM-205ENST00000485947 SLC18A3Q16572 532 aa17.9■□□□□ 0.46
VIM-205ENST00000485947 PAQR9Q6ZVX9 377 aa17.9■□□□□ 0.46
VIM-205ENST00000485947 ACOT1Q86TX2 421 aa17.9■□□□□ 0.46
VIM-205ENST00000485947 GPIHBP1Q8IV16 184 aa17.9■□□□□ 0.46
VIM-205ENST00000485947 TXLNBQ8N3L3 684 aa17.9■□□□□ 0.46
VIM-205ENST00000485947 ARL14EPQ8N8R7 260 aaPredicted RBP17.9■□□□□ 0.46
VIM-205ENST00000485947 ATRIPQ8WXE1 791 aa17.9■□□□□ 0.46
VIM-205ENST00000485947 HNRNPABQ99729 332 aaKnown RBP17.9■□□□□ 0.46
VIM-205ENST00000485947 SYT11Q9BT88 431 aa17.9■□□□□ 0.46
VIM-205ENST00000485947 LUC7LQ9NQ29 371 aaKnown RBP17.9■□□□□ 0.46
VIM-205ENST00000485947 HPS4Q9NQG7 708 aa17.9■□□□□ 0.46
VIM-205ENST00000485947 NOCTQ9UK39 431 aaKnown RBP17.9■□□□□ 0.46
VIM-205ENST00000485947 ADGRG1Q9Y653 693 aa17.9■□□□□ 0.46
VIM-205ENST00000485947 PTPRDP23468 1912 aa17.9■□□□□ 0.46
VIM-205ENST00000485947 C2orf78A6NCI8 922 aa17.89■□□□□ 0.45
VIM-205ENST00000485947 CLDN5O00501 218 aa17.89■□□□□ 0.45
VIM-205ENST00000485947 TNFRSF10BO14763 440 aa17.89■□□□□ 0.45
VIM-205ENST00000485947 CILPO75339 1184 aa17.89■□□□□ 0.45
VIM-205ENST00000485947 OAS1P00973 400 aaKnown RBP17.89■□□□□ 0.45
VIM-205ENST00000485947 PAEPP09466 180 aa17.89■□□□□ 0.45
VIM-205ENST00000485947 CYP11B1P15538 503 aa17.89■□□□□ 0.45
VIM-205ENST00000485947 CD58P19256 250 aa17.89■□□□□ 0.45
VIM-205ENST00000485947 HOXA6P31267 233 aa17.89■□□□□ 0.45
VIM-205ENST00000485947 RAP1GAPP47736 663 aa17.89■□□□□ 0.45
VIM-205ENST00000485947 IFNAR2P48551 515 aa17.89■□□□□ 0.45
VIM-205ENST00000485947 GRSF1Q12849 480 aaKnown RBP eCLIP17.89■□□□□ 0.45
VIM-205ENST00000485947 CCINQ13939 588 aa17.89■□□□□ 0.45
VIM-205ENST00000485947 FBXO43Q4G163 708 aa17.89■□□□□ 0.45
VIM-205ENST00000485947 TMEM196Q5HYL7 178 aa17.89■□□□□ 0.45
VIM-205ENST00000485947 C10orf76Q5T2E6 689 aa17.89■□□□□ 0.45
VIM-205ENST00000485947 TOGARAM2Q6ZUX3 1019 aa17.89■□□□□ 0.45
VIM-205ENST00000485947 SH3RF2Q8TEC5 729 aa17.89■□□□□ 0.45
VIM-205ENST00000485947 SLC22A12Q96S37 553 aa17.89■□□□□ 0.45
VIM-205ENST00000485947 CYP2S1Q96SQ9 504 aa17.89■□□□□ 0.45
VIM-205ENST00000485947 AGPAT1Q99943 283 aa17.89■□□□□ 0.45
VIM-205ENST00000485947 TMEM30AQ9NV96 361 aa17.89■□□□□ 0.45
VIM-205ENST00000485947 DUS2Q9NX74 493 aaKnown RBP17.89■□□□□ 0.45
VIM-205ENST00000485947 PPP2R2CQ9Y2T4 447 aa17.89■□□□□ 0.45
VIM-205ENST00000485947 TICRRQ7Z2Z1 1910 aa17.89■□□□□ 0.45
VIM-205ENST00000485947 GOLGA6L9A6NEM1 432 aa17.88■□□□□ 0.45
VIM-205ENST00000485947 ATG13O75143 517 aa17.88■□□□□ 0.45
VIM-205ENST00000485947 AP1G2O75843 785 aa17.88■□□□□ 0.45
VIM-205ENST00000485947 FAM200BP0CF97 657 aa17.88■□□□□ 0.45
VIM-205ENST00000485947 TNFAIP3P21580 790 aa17.88■□□□□ 0.45
VIM-205ENST00000485947 DRD1P21728 446 aa17.88■□□□□ 0.45
VIM-205ENST00000485947 GNA15P30679 374 aa17.88■□□□□ 0.45
VIM-205ENST00000485947 CXCL12P48061 93 aa17.88■□□□□ 0.45
VIM-205ENST00000485947 CACNA2D1P54289 1103 aa17.88■□□□□ 0.45
VIM-205ENST00000485947 CDR2Q01850 454 aa17.88■□□□□ 0.45
VIM-205ENST00000485947 TNK2Q07912 1038 aa17.88■□□□□ 0.45
VIM-205ENST00000485947 TXNDC11Q6PKC3 985 aa17.88■□□□□ 0.45
VIM-205ENST00000485947 SLC47A2Q86VL8 602 aa17.88■□□□□ 0.45
VIM-205ENST00000485947 CCAR2Q8N163 923 aaKnown RBP17.88■□□□□ 0.45
VIM-205ENST00000485947 SLC2A14Q8TDB8 520 aa17.88■□□□□ 0.45
VIM-205ENST00000485947 FBXO32Q969P5 355 aa17.88■□□□□ 0.45
VIM-205ENST00000485947 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.88■□□□□ 0.45
VIM-205ENST00000485947 EBF3Q9H4W6 596 aa17.88■□□□□ 0.45
VIM-205ENST00000485947 ECT2Q9H8V3 914 aa17.88■□□□□ 0.45
VIM-205ENST00000485947 KRT82Q9NSB4 513 aa17.88■□□□□ 0.45
VIM-205ENST00000485947 SPTLC3Q9NUV7 552 aa17.88■□□□□ 0.45
VIM-205ENST00000485947 ADAMTS1Q9UHI8 967 aa17.88■□□□□ 0.45
VIM-205ENST00000485947 KIF26AQ9ULI4 1882 aaPredicted RBP17.88■□□□□ 0.45
VIM-205ENST00000485947 OBSL1O75147 1896 aa17.87■□□□□ 0.45
VIM-205ENST00000485947 LILRB5O75023 590 aa17.87■□□□□ 0.45
VIM-205ENST00000485947 NFATC1O95644 943 aa17.87■□□□□ 0.45
VIM-205ENST00000485947 ZDHHC11BP0C7U3 371 aa17.87■□□□□ 0.45
VIM-205ENST00000485947 SOX9P48436 509 aa17.87■□□□□ 0.45
VIM-205ENST00000485947 SLC5A3P53794 718 aa17.87■□□□□ 0.45
VIM-205ENST00000485947 EML3Q32P44 896 aa17.87■□□□□ 0.45
VIM-205ENST00000485947 HECTD3Q5T447 861 aa17.87■□□□□ 0.45
VIM-205ENST00000485947 NOP9Q86U38 636 aaKnown RBP17.87■□□□□ 0.45
VIM-205ENST00000485947 ACRBPQ8NEB7 543 aa17.87■□□□□ 0.45
VIM-205ENST00000485947 SLC30A5Q8TAD4 765 aa17.87■□□□□ 0.45
VIM-205ENST00000485947 DDX1Q92499 740 aaKnown RBP17.87■□□□□ 0.45
VIM-205ENST00000485947 OTUB2Q96DC9 234 aa17.87■□□□□ 0.45
VIM-205ENST00000485947 CYFIP2Q96F07 1278 aa17.87■□□□□ 0.45
VIM-205ENST00000485947 KCNK16Q96T55 309 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms