RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 PLA2G4AP47712 749 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 HARS2P49590 506 aaKnown RBP8.43□□□□□ -1.06
USP40-216ENST00000485943 COG7P83436 770 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 EFEMP1Q12805 493 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 GRSF1Q12849 480 aaKnown RBP eCLIP8.43□□□□□ -1.06
USP40-216ENST00000485943 ZNF268Q14587 947 aaPredicted RBP8.43□□□□□ -1.06
USP40-216ENST00000485943 ANO4Q32M45 955 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 TMEM164Q5U3C3 297 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 TAF3Q5VWG9 929 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 OR6B2Q6IFH4 312 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 GJB7Q6PEY0 223 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 LCLAT1Q6UWP7 414 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 VITQ6UXI7 678 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 TOGARAM2Q6ZUX3 1019 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 SND1Q7KZF4 910 aaKnown RBP eCLIP8.43□□□□□ -1.06
USP40-216ENST00000485943 PASD1Q8IV76 773 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 TMEM35BQ8NCS4 154 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 FEZF2Q8TBJ5 459 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 KAT5Q92993 513 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 HSFY1Q96LI6 401 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 CYP2S1Q96SQ9 504 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 TTLL2Q9BWV7 592 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 ULBP1Q9BZM6 244 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 UBXN6Q9BZV1 441 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 DCLK3Q9C098 648 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 IRF2BPLQ9H1B7 796 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 CSNK1G1Q9HCP0 422 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 CNGB3Q9NQW8 809 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 SLC2A4RGQ9NR83 387 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 HEBP1Q9NRV9 189 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 GKN1Q9NS71 199 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 SLC12A6Q9UHW9 1150 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 NOVA2Q9UNW9 492 aaKnown RBP8.43□□□□□ -1.06
USP40-216ENST00000485943 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.43□□□□□ -1.06
USP40-216ENST00000485943 SCML2Q9UQR0 700 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 GREB1Q4ZG55 1949 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 SLC12A8A0AV02 714 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 FAM170BA6NMN3 283 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 GOLGA6L6A8MZA4 724 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 LEFTY2O00292 366 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 O00370 1275 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 BEST1O76090 585 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 PAPLNO95428 1278 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 APOEP02649 317 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 NCAM1P13591 858 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 GLULP15104 373 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 GBP1P32455 592 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 TUBP50607 506 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 KIF11P52732 1056 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 CACNA2D1P54289 1103 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 RUNX3Q13761 415 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 EML3Q32P44 896 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 TDRD12Q587J7 1177 aaKnown RBP8.42□□□□□ -1.06
USP40-216ENST00000485943 KLHDC7AQ5VTJ3 777 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 CDKAL1Q5VV42 579 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 HFE2Q6ZVN8 426 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 CCDC186Q7Z3E2 898 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 LUZP1Q86V48 1076 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 WHAMMQ8TF30 809 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 ZNF606Q8WXB4 792 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 USP13Q92995 863 aaPredicted RBP8.42□□□□□ -1.06
USP40-216ENST00000485943 ZFYVE19Q96K21 471 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 XPO6Q96QU8 1125 aaKnown RBP8.42□□□□□ -1.06
USP40-216ENST00000485943 DDX50Q9BQ39 737 aaKnown RBP8.42□□□□□ -1.06
USP40-216ENST00000485943 RPP25Q9BUL9 199 aaKnown RBP8.42□□□□□ -1.06
USP40-216ENST00000485943 STK33Q9BYT3 514 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 SMOC2Q9H3U7 446 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 EBF3Q9H4W6 596 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 CCSER2Q9H7U1 834 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 TRPV4Q9HBA0 871 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 CBX8Q9HC52 389 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 ABCC13Q9NSE7 274 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 SPATA6Q9NWH7 488 aaPredicted RBP8.42□□□□□ -1.06
USP40-216ENST00000485943 ZNHIT6Q9NWK9 470 aaKnown RBP8.42□□□□□ -1.06
USP40-216ENST00000485943 MARCH2Q9P0N8 246 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 LIMA1Q9UHB6 759 aaKnown RBP8.42□□□□□ -1.06
USP40-216ENST00000485943 ARHGAP26Q9UNA1 814 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 ZNF510Q9Y2H8 683 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 NME7Q9Y5B8 376 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 FHOD1Q9Y613 1164 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 OBSL1O75147 1896 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 MIA3Q5JRA6 1907 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 TICRRQ7Z2Z1 1910 aa8.42□□□□□ -1.06
USP40-216ENST00000485943 NOTCH4Q99466 2003 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 HELZP42694 1942 aaKnown RBP8.41□□□□□ -1.06
USP40-216ENST00000485943 ANAPC1Q9H1A4 1944 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 SYNJ2BP-COX16A0A087WUM0 186 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 KANSL1LA0AUZ9 987 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 PALM2-AKAP2B1ALY0 433 aaPredicted RBP8.41□□□□□ -1.06
USP40-216ENST00000485943 FOXN3O00409 490 aaPredicted RBP8.41□□□□□ -1.06
USP40-216ENST00000485943 COCHO43405 550 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 LAMTOR5O43504 91 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 MOSPD3O75425 235 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 PRAMEF12O95522 483 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 LTFP02788 710 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 FERP16591 822 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 TNFAIP3P21580 790 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 SOX5P35711 763 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 MAGEA9P43362 315 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 NSFP46459 744 aaKnown RBP8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms