RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 VPS45Q9NRW7 570 aa3.88□□□□□ -1.79
VPS50-216ENST00000484954 STEAP1Q9UHE8 339 aa3.88□□□□□ -1.79
VPS50-216ENST00000484954 SNX13Q9Y5W8 968 aa3.88□□□□□ -1.79
VPS50-216ENST00000484954 COL15A1P39059 1388 aa3.88□□□□□ -1.79
VPS50-216ENST00000484954 C16orf96A6NNT2 1141 aa3.87□□□□□ -1.79
VPS50-216ENST00000484954 KPNA5O15131 536 aa3.87□□□□□ -1.79
VPS50-216ENST00000484954 BMP15O95972 392 aa3.87□□□□□ -1.79
VPS50-216ENST00000484954 ANXA2P07355 339 aaKnown RBP3.87□□□□□ -1.79
VPS50-216ENST00000484954 PRF1P14222 555 aa3.87□□□□□ -1.79
VPS50-216ENST00000484954 PHKG2P15735 406 aa3.87□□□□□ -1.79
VPS50-216ENST00000484954 ADRA1DP25100 572 aa3.87□□□□□ -1.79
VPS50-216ENST00000484954 ATICP31939 592 aa3.87□□□□□ -1.79
VPS50-216ENST00000484954 GALNSP34059 522 aa3.87□□□□□ -1.79
VPS50-216ENST00000484954 GHRHRQ02643 423 aa3.87□□□□□ -1.79
VPS50-216ENST00000484954 ZNF91Q05481 1191 aa3.87□□□□□ -1.79
VPS50-216ENST00000484954 RBMS2Q15434 407 aaKnown RBP3.87□□□□□ -1.79
VPS50-216ENST00000484954 KLHL22Q53GT1 634 aa3.87□□□□□ -1.79
VPS50-216ENST00000484954 C10orf25Q5T742 122 aa3.87□□□□□ -1.79
VPS50-216ENST00000484954 PXDC1Q5TGL8 231 aa3.87□□□□□ -1.79
VPS50-216ENST00000484954 RNF44Q7L0R7 432 aa3.87□□□□□ -1.79
VPS50-216ENST00000484954 IRF2BP2Q7Z5L9 587 aa3.87□□□□□ -1.79
VPS50-216ENST00000484954 PIP4P1Q86T03 277 aa3.87□□□□□ -1.79
VPS50-216ENST00000484954 KRT78Q8N1N4 520 aa3.87□□□□□ -1.79
VPS50-216ENST00000484954 SMCR8Q8TEV9 937 aaPredicted RBP3.87□□□□□ -1.79
VPS50-216ENST00000484954 ZDHHC12Q96GR4 267 aa3.87□□□□□ -1.79
VPS50-216ENST00000484954 ZNF668Q96K58 619 aaPredicted RBP3.87□□□□□ -1.79
VPS50-216ENST00000484954 SIGLEC11Q96RL6 698 aa3.87□□□□□ -1.79
VPS50-216ENST00000484954 SLC25A32Q9H2D1 315 aa3.87□□□□□ -1.79
VPS50-216ENST00000484954 DDX21Q9NR30 783 aaKnown RBP eCLIP3.87□□□□□ -1.79
VPS50-216ENST00000484954 FZD4Q9ULV1 537 aa3.87□□□□□ -1.79
VPS50-216ENST00000484954 CYSRT1A8MQ03 144 aa3.86□□□□□ -1.79
VPS50-216ENST00000484954 TRIM38O00635 465 aa3.86□□□□□ -1.79
VPS50-216ENST00000484954 RRHO14718 337 aa3.86□□□□□ -1.79
VPS50-216ENST00000484954 SNX2O60749 519 aa3.86□□□□□ -1.79
VPS50-216ENST00000484954 PQBP1O60828 265 aaKnown RBP3.86□□□□□ -1.79
VPS50-216ENST00000484954 CBFA2T3O75081 653 aa3.86□□□□□ -1.79
VPS50-216ENST00000484954 RNF8O76064 485 aa3.86□□□□□ -1.79
VPS50-216ENST00000484954 INMTO95050 263 aa3.86□□□□□ -1.79
VPS50-216ENST00000484954 NTN1O95631 604 aa3.86□□□□□ -1.79
VPS50-216ENST00000484954 TMEM225BP0DP42 221 aa3.86□□□□□ -1.79
VPS50-216ENST00000484954 ARP10275 920 aa3.86□□□□□ -1.79
VPS50-216ENST00000484954 SLC5A1P13866 664 aa3.86□□□□□ -1.79
VPS50-216ENST00000484954 CD19P15391 556 aa3.86□□□□□ -1.79
VPS50-216ENST00000484954 PBX1P40424 430 aa3.86□□□□□ -1.79
VPS50-216ENST00000484954 RAE1P78406 368 aaKnown RBP3.86□□□□□ -1.79
VPS50-216ENST00000484954 ZNF543Q08ER8 600 aa3.86□□□□□ -1.79
VPS50-216ENST00000484954 DAG1Q14118 895 aa3.86□□□□□ -1.79
VPS50-216ENST00000484954 KPNB1Q14974 876 aaKnown RBP3.86□□□□□ -1.79
VPS50-216ENST00000484954 ACOX1Q15067 660 aa3.86□□□□□ -1.79
VPS50-216ENST00000484954 ST3GAL2Q16842 350 aa3.86□□□□□ -1.79
VPS50-216ENST00000484954 AASDHQ4L235 1098 aaPredicted RBP3.86□□□□□ -1.79
VPS50-216ENST00000484954 CC2D1BQ5T0F9 858 aaKnown RBP3.86□□□□□ -1.79
VPS50-216ENST00000484954 DENND2CQ68D51 928 aa3.86□□□□□ -1.79
VPS50-216ENST00000484954 CRTC1Q6UUV9 634 aa3.86□□□□□ -1.79
VPS50-216ENST00000484954 TFAP2DQ7Z6R9 452 aa3.86□□□□□ -1.79
VPS50-216ENST00000484954 DGKHQ86XP1 1220 aa3.86□□□□□ -1.79
VPS50-216ENST00000484954 KRT73Q86Y46 540 aa3.86□□□□□ -1.79
VPS50-216ENST00000484954 FSTL5Q8N475 847 aaPredicted RBP3.86□□□□□ -1.79
VPS50-216ENST00000484954 RNF152Q8N8N0 203 aa3.86□□□□□ -1.79
VPS50-216ENST00000484954 C16orf52Q8NHV5 167 aa3.86□□□□□ -1.79
VPS50-216ENST00000484954 SPATA3Q8NHX4 192 aa3.86□□□□□ -1.79
VPS50-216ENST00000484954 MBD3L2Q8NHZ7 208 aaPredicted RBP3.86□□□□□ -1.79
VPS50-216ENST00000484954 SUN3Q8TAQ9 357 aa3.86□□□□□ -1.79
VPS50-216ENST00000484954 WIPF2Q8TF74 440 aaPredicted RBP3.86□□□□□ -1.79
VPS50-216ENST00000484954 LRRC46Q96FV0 321 aa3.86□□□□□ -1.79
VPS50-216ENST00000484954 FAM227BQ96M60 508 aa3.86□□□□□ -1.79
VPS50-216ENST00000484954 TM2D2Q9BX73 214 aa3.86□□□□□ -1.79
VPS50-216ENST00000484954 UNKQ9C0B0 810 aaKnown RBP3.86□□□□□ -1.79
VPS50-216ENST00000484954 NUP62CLQ9H1M0 184 aa3.86□□□□□ -1.79
VPS50-216ENST00000484954 LY6G6EA0A0G2JKS1 128 aa3.85□□□□□ -1.79
VPS50-216ENST00000484954 POM121BA6NF01 834 aa3.85□□□□□ -1.79
VPS50-216ENST00000484954 RHPN2P1A8MT19 583 aa3.85□□□□□ -1.79
VPS50-216ENST00000484954 KCNAB3O43448 404 aa3.85□□□□□ -1.79
VPS50-216ENST00000484954 WDR47O94967 919 aa3.85□□□□□ -1.79
VPS50-216ENST00000484954 IL18RAPO95256 599 aa3.85□□□□□ -1.79
VPS50-216ENST00000484954 FGBP02675 491 aa3.85□□□□□ -1.79
VPS50-216ENST00000484954 TSHRP16473 764 aa3.85□□□□□ -1.79
VPS50-216ENST00000484954 LINC00205P59089 165 aa3.85□□□□□ -1.79
VPS50-216ENST00000484954 TXNL4AP83876 142 aaKnown RBP3.85□□□□□ -1.79
VPS50-216ENST00000484954 DNASE1L3Q13609 305 aa3.85□□□□□ -1.79
VPS50-216ENST00000484954 CLCA4Q14CN2 919 aa3.85□□□□□ -1.79
VPS50-216ENST00000484954 ZNF260Q3ZCT1 412 aa3.85□□□□□ -1.79
VPS50-216ENST00000484954 C4orf46Q504U0 113 aa3.85□□□□□ -1.79
VPS50-216ENST00000484954 ABLIM2Q6H8Q1 611 aa3.85□□□□□ -1.79
VPS50-216ENST00000484954 VSTM1Q6UX27 236 aa3.85□□□□□ -1.79
VPS50-216ENST00000484954 CRELD2Q6UXH1 353 aaPredicted RBP3.85□□□□□ -1.79
VPS50-216ENST00000484954 P3H2Q8IVL5 708 aa3.85□□□□□ -1.79
VPS50-216ENST00000484954 DDX51Q8N8A6 666 aaKnown RBP eCLIP3.85□□□□□ -1.79
VPS50-216ENST00000484954 FAM71DQ8N9W8 422 aa3.85□□□□□ -1.79
VPS50-216ENST00000484954 PIGOQ8TEQ8 1089 aa3.85□□□□□ -1.79
VPS50-216ENST00000484954 IPCEF1Q8WWN9 437 aaPredicted RBP3.85□□□□□ -1.79
VPS50-216ENST00000484954 IQCDQ96DY2 449 aa3.85□□□□□ -1.79
VPS50-216ENST00000484954 VPS50Q96JG6 964 aa3.85□□□□□ -1.79
VPS50-216ENST00000484954 TMEM79Q9BSE2 394 aa3.85□□□□□ -1.79
VPS50-216ENST00000484954 AGO4Q9HCK5 861 aaKnown RBP3.85□□□□□ -1.79
VPS50-216ENST00000484954 PNPLA8Q9NP80 782 aa3.85□□□□□ -1.79
VPS50-216ENST00000484954 HEYLQ9NQ87 328 aaPredicted RBP3.85□□□□□ -1.79
VPS50-216ENST00000484954 SEMA5BQ9P283 1151 aa3.85□□□□□ -1.79
VPS50-216ENST00000484954 VPS4AQ9UN37 437 aa3.85□□□□□ -1.79
VPS50-216ENST00000484954 FAM50BQ9Y247 325 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms