RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 TAPT1Q6NXT6 567 aa6.16□□□□□ -1.42
UPF3A-205ENST00000479712 POLNQ7Z5Q5 900 aa6.16□□□□□ -1.42
UPF3A-205ENST00000479712 VGLL2Q8N8G2 317 aa6.16□□□□□ -1.42
UPF3A-205ENST00000479712 ATG16L2Q8NAA4 619 aa6.16□□□□□ -1.42
UPF3A-205ENST00000479712 FEZF2Q8TBJ5 459 aa6.16□□□□□ -1.42
UPF3A-205ENST00000479712 RAET1EQ8TD07 263 aa6.16□□□□□ -1.42
UPF3A-205ENST00000479712 MARS2Q96GW9 593 aaKnown RBP6.16□□□□□ -1.42
UPF3A-205ENST00000479712 SLC46A1Q96NT5 459 aa6.16□□□□□ -1.42
UPF3A-205ENST00000479712 TRIB1Q96RU8 372 aa6.16□□□□□ -1.42
UPF3A-205ENST00000479712 PPP1R9BQ96SB3 815 aa6.16□□□□□ -1.42
UPF3A-205ENST00000479712 PNKPQ96T60 521 aa6.16□□□□□ -1.42
UPF3A-205ENST00000479712 RMDN3Q96TC7 470 aa6.16□□□□□ -1.42
UPF3A-205ENST00000479712 TTYH3Q9C0H2 523 aa6.16□□□□□ -1.42
UPF3A-205ENST00000479712 HEYLQ9NQ87 328 aaPredicted RBP6.16□□□□□ -1.42
UPF3A-205ENST00000479712 ETAA1Q9NY74 926 aa6.16□□□□□ -1.42
UPF3A-205ENST00000479712 FAM205AQ6ZU69 1335 aa6.16□□□□□ -1.42
UPF3A-205ENST00000479712 LRRC37A2A6NM11 1700 aa6.16□□□□□ -1.42
UPF3A-205ENST00000479712 MAP1BP46821 2468 aaKnown RBP6.15□□□□□ -1.42
UPF3A-205ENST00000479712 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa6.15□□□□□ -1.42
UPF3A-205ENST00000479712 LOC102723971A0A1B0GUV8 181 aa6.15□□□□□ -1.42
UPF3A-205ENST00000479712 YDJCA8MPS7 323 aa6.15□□□□□ -1.42
UPF3A-205ENST00000479712 CAPN14A8MX76 684 aa6.15□□□□□ -1.42
UPF3A-205ENST00000479712 FOXS1O43638 330 aa6.15□□□□□ -1.42
UPF3A-205ENST00000479712 A1BGP04217 495 aa6.15□□□□□ -1.42
UPF3A-205ENST00000479712 BTF3P20290 206 aaKnown RBP6.15□□□□□ -1.42
UPF3A-205ENST00000479712 CHRM3P20309 590 aa6.15□□□□□ -1.42
UPF3A-205ENST00000479712 CCT5P48643 541 aa6.15□□□□□ -1.42
UPF3A-205ENST00000479712 UBXN2AP68543 259 aa6.15□□□□□ -1.42
UPF3A-205ENST00000479712 NHLH2Q02577 135 aa6.15□□□□□ -1.42
UPF3A-205ENST00000479712 GALNT1Q10472 559 aaPredicted RBP6.15□□□□□ -1.42
UPF3A-205ENST00000479712 TNIP1Q15025 636 aa6.15□□□□□ -1.42
UPF3A-205ENST00000479712 PLA1AQ53H76 456 aa6.15□□□□□ -1.42
UPF3A-205ENST00000479712 TSHZ3Q63HK5 1081 aa6.15□□□□□ -1.42
UPF3A-205ENST00000479712 SLC30A10Q6XR72 485 aa6.15□□□□□ -1.42
UPF3A-205ENST00000479712 CIR1Q86X95 450 aaPredicted RBP6.15□□□□□ -1.42
UPF3A-205ENST00000479712 GAS2L3Q86XJ1 694 aa6.15□□□□□ -1.42
UPF3A-205ENST00000479712 RHOT2Q8IXI1 618 aa6.15□□□□□ -1.42
UPF3A-205ENST00000479712 GSPT2Q8IYD1 628 aaKnown RBP6.15□□□□□ -1.42
UPF3A-205ENST00000479712 CACNA2D3Q8IZS8 1091 aa6.15□□□□□ -1.42
UPF3A-205ENST00000479712 PSD4Q8NDX1 1056 aa6.15□□□□□ -1.42
UPF3A-205ENST00000479712 NSUN7Q8NE18 718 aaKnown RBP6.15□□□□□ -1.42
UPF3A-205ENST00000479712 ISCA1Q9BUE6 129 aa6.15□□□□□ -1.42
UPF3A-205ENST00000479712 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.15□□□□□ -1.42
UPF3A-205ENST00000479712 OBP2BQ9NPH6 170 aa6.15□□□□□ -1.42
UPF3A-205ENST00000479712 LRFN1Q9P244 771 aa6.15□□□□□ -1.42
UPF3A-205ENST00000479712 ZFHX2Q9C0A1 2572 aaPredicted RBP6.15□□□□□ -1.42
UPF3A-205ENST00000479712 DDX60LQ5H9U9 1706 aaKnown RBP6.15□□□□□ -1.42
UPF3A-205ENST00000479712 COL4A6Q14031 1691 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 ACACBO00763 2458 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 CCDC195A0A1B0GUA6 201 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 LGALS16A8MUM7 142 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 H7C4K7 107 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 PSMD14O00487 310 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 DCLK1O15075 740 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 CCP110O43303 1012 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 SH3BP5O60239 455 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 PPFIA4O75335 1185 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 PLATP00750 562 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 CYP19A1P11511 503 aaPredicted RBP6.14□□□□□ -1.43
UPF3A-205ENST00000479712 IDEP14735 1019 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 CFPP27918 469 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 GABRB3P28472 473 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 CTGFP29279 349 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 ALDH1B1P30837 517 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 CPT1AP50416 773 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 RABGGTBP53611 331 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 COPAP53621 1224 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 INHBEP58166 350 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 SATB1Q01826 763 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 BOP1Q14137 746 aaKnown RBP6.14□□□□□ -1.43
UPF3A-205ENST00000479712 ARHGEF7Q14155 803 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 RRS1Q15050 365 aaKnown RBP6.14□□□□□ -1.43
UPF3A-205ENST00000479712 RAB30Q15771 203 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 INSCQ1MX18 579 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 AGAP9Q5VTM2 703 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 C1QL3Q5VWW1 255 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 SGMS1Q86VZ5 419 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 GLIS1Q8NBF1 620 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 OR56A1Q8NGH5 318 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 SMCR8Q8TEV9 937 aaPredicted RBP6.14□□□□□ -1.43
UPF3A-205ENST00000479712 IPO4Q8TEX9 1081 aaKnown RBP6.14□□□□□ -1.43
UPF3A-205ENST00000479712 NEU1Q99519 415 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 MESP1Q9BRJ9 268 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 RNPEPQ9H4A4 650 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 NECTIN3Q9NQS3 549 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 DACT1Q9NYF0 836 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 RGL1Q9NZL6 768 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 GRHPRQ9UBQ7 328 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 SHOC2Q9UQ13 582 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 USP15Q9Y4E8 981 aaPredicted RBP6.14□□□□□ -1.43
UPF3A-205ENST00000479712 RAD54BQ9Y620 910 aa6.14□□□□□ -1.43
UPF3A-205ENST00000479712 FLNBO75369 2602 aaKnown RBP6.13□□□□□ -1.43
UPF3A-205ENST00000479712 A0A087WZ62 844 aa6.13□□□□□ -1.43
UPF3A-205ENST00000479712 LEFTY2O00292 366 aa6.13□□□□□ -1.43
UPF3A-205ENST00000479712 SYT5O00445 386 aa6.13□□□□□ -1.43
UPF3A-205ENST00000479712 NPC1O15118 1278 aa6.13□□□□□ -1.43
UPF3A-205ENST00000479712 ATXN1LP0C7T5 689 aaKnown RBP6.13□□□□□ -1.43
UPF3A-205ENST00000479712 TPH1P17752 444 aa6.13□□□□□ -1.43
UPF3A-205ENST00000479712 BMP7P18075 431 aa6.13□□□□□ -1.43
UPF3A-205ENST00000479712 APOBEC3AP31941 199 aaPredicted RBP6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms