RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 TUFT1Q9NNX1 390 aa8.01□□□□□ -1.13
USP54-208ENST00000461520 LIMCH1Q9UPQ0 1083 aa8.01□□□□□ -1.13
USP54-208ENST00000461520 SSX2IPQ9Y2D8 614 aa8.01□□□□□ -1.13
USP54-208ENST00000461520 IPPQ9Y573 584 aa8.01□□□□□ -1.13
USP54-208ENST00000461520 MYO15AQ9UKN7 3530 aa8.01□□□□□ -1.13
USP54-208ENST00000461520 SPTBN4Q9H254 2564 aa8□□□□□ -1.13
USP54-208ENST00000461520 H7BY64 318 aa8□□□□□ -1.13
USP54-208ENST00000461520 NRP1O14786 923 aa8□□□□□ -1.13
USP54-208ENST00000461520 HGSO14964 777 aaPredicted RBP8□□□□□ -1.13
USP54-208ENST00000461520 KLF4O43474 513 aa8□□□□□ -1.13
USP54-208ENST00000461520 B4GALT3O60512 393 aa8□□□□□ -1.13
USP54-208ENST00000461520 POMCP01189 267 aa8□□□□□ -1.13
USP54-208ENST00000461520 SOD2P04179 222 aa8□□□□□ -1.13
USP54-208ENST00000461520 EPCAMP16422 314 aa8□□□□□ -1.13
USP54-208ENST00000461520 ARF4P18085 180 aaPredicted RBP8□□□□□ -1.13
USP54-208ENST00000461520 GLRA2P23416 452 aa8□□□□□ -1.13
USP54-208ENST00000461520 CNR2P34972 360 aa8□□□□□ -1.13
USP54-208ENST00000461520 VCPP55072 806 aaKnown RBP8□□□□□ -1.13
USP54-208ENST00000461520 ITGA1P56199 1179 aa8□□□□□ -1.13
USP54-208ENST00000461520 HMGN5P82970 282 aaKnown RBP8□□□□□ -1.13
USP54-208ENST00000461520 MBTD1Q05BQ5 628 aa8□□□□□ -1.13
USP54-208ENST00000461520 DSC1Q08554 894 aa8□□□□□ -1.13
USP54-208ENST00000461520 CR1LQ2VPA4 569 aa8□□□□□ -1.13
USP54-208ENST00000461520 ATAT1Q5SQI0 421 aa8□□□□□ -1.13
USP54-208ENST00000461520 STEAP3Q658P3 488 aa8□□□□□ -1.13
USP54-208ENST00000461520 COLGALT2Q8IYK4 626 aa8□□□□□ -1.13
USP54-208ENST00000461520 MCPH1Q8NEM0 835 aa8□□□□□ -1.13
USP54-208ENST00000461520 ADAMTS17Q8TE56 1095 aa8□□□□□ -1.13
USP54-208ENST00000461520 PIGOQ8TEQ8 1089 aa8□□□□□ -1.13
USP54-208ENST00000461520 SLC22A17Q8WUG5 538 aa8□□□□□ -1.13
USP54-208ENST00000461520 KCTD13Q8WZ19 329 aa8□□□□□ -1.13
USP54-208ENST00000461520 CPB2Q96IY4 423 aa8□□□□□ -1.13
USP54-208ENST00000461520 C8orf76Q96K31 380 aa8□□□□□ -1.13
USP54-208ENST00000461520 KLHL5Q96PQ7 755 aa8□□□□□ -1.13
USP54-208ENST00000461520 LLPHQ9BRT6 129 aaKnown RBP8□□□□□ -1.13
USP54-208ENST00000461520 YIPF4Q9BSR8 244 aa8□□□□□ -1.13
USP54-208ENST00000461520 POLR3CQ9BUI4 534 aaPredicted RBP8□□□□□ -1.13
USP54-208ENST00000461520 VN1R3Q9BXE9 311 aa8□□□□□ -1.13
USP54-208ENST00000461520 EIF2AQ9BY44 585 aaKnown RBP8□□□□□ -1.13
USP54-208ENST00000461520 TRIM6Q9C030 488 aaPredicted RBP8□□□□□ -1.13
USP54-208ENST00000461520 POLR3FQ9H1D9 316 aaPredicted RBP8□□□□□ -1.13
USP54-208ENST00000461520 TMEM60Q9H2L4 133 aa8□□□□□ -1.13
USP54-208ENST00000461520 FOXP1Q9H334 677 aaPredicted RBP8□□□□□ -1.13
USP54-208ENST00000461520 PCDH18Q9HCL0 1135 aa8□□□□□ -1.13
USP54-208ENST00000461520 MRPL17Q9NRX2 175 aaKnown RBP8□□□□□ -1.13
USP54-208ENST00000461520 GIT1Q9Y2X7 761 aa8□□□□□ -1.13
USP54-208ENST00000461520 NPFFR2Q9Y5X5 522 aa8□□□□□ -1.13
USP54-208ENST00000461520 ZMYM2Q9UBW7 1377 aa7.99□□□□□ -1.13
USP54-208ENST00000461520 A0A1B0GUA9 196 aa7.99□□□□□ -1.13
USP54-208ENST00000461520 ARL5CA6NH57 179 aa7.99□□□□□ -1.13
USP54-208ENST00000461520 C2CD4DB7Z1M9 353 aa7.99□□□□□ -1.13
USP54-208ENST00000461520 DLX3O60479 287 aa7.99□□□□□ -1.13
USP54-208ENST00000461520 USO1O60763 962 aaKnown RBP7.99□□□□□ -1.13
USP54-208ENST00000461520 URODP06132 367 aa7.99□□□□□ -1.13
USP54-208ENST00000461520 CNPP09543 421 aaKnown RBP7.99□□□□□ -1.13
USP54-208ENST00000461520 DMDP11532 3685 aa7.99□□□□□ -1.13
USP54-208ENST00000461520 ATP2B1P20020 1258 aa7.99□□□□□ -1.13
USP54-208ENST00000461520 MUTP22033 750 aa7.99□□□□□ -1.13
USP54-208ENST00000461520 SP100P23497 879 aaPredicted RBP7.99□□□□□ -1.13
USP54-208ENST00000461520 RPL13P26373 211 aaKnown RBP7.99□□□□□ -1.13
USP54-208ENST00000461520 KLRC2P26717 231 aa7.99□□□□□ -1.13
USP54-208ENST00000461520 RPA1P27694 616 aa7.99□□□□□ -1.13
USP54-208ENST00000461520 MCM7P33993 719 aa7.99□□□□□ -1.13
USP54-208ENST00000461520 MLH1P40692 756 aa7.99□□□□□ -1.13
USP54-208ENST00000461520 OR1G1P47890 313 aa7.99□□□□□ -1.13
USP54-208ENST00000461520 TRAPPC10P48553 1259 aa7.99□□□□□ -1.13
USP54-208ENST00000461520 CLCN4P51793 760 aa7.99□□□□□ -1.13
USP54-208ENST00000461520 PLXNA3P51805 1871 aa7.99□□□□□ -1.13
USP54-208ENST00000461520 RARS2Q5T160 578 aaKnown RBP7.99□□□□□ -1.13
USP54-208ENST00000461520 SLC27A1Q6PCB7 646 aa7.99□□□□□ -1.13
USP54-208ENST00000461520 C15orf39Q6ZRI6 1047 aa7.99□□□□□ -1.13
USP54-208ENST00000461520 CATSPER3Q86XQ3 398 aa7.99□□□□□ -1.13
USP54-208ENST00000461520 UBALD2Q8IYN6 164 aa7.99□□□□□ -1.13
USP54-208ENST00000461520 RNF168Q8IYW5 571 aaPredicted RBP7.99□□□□□ -1.13
USP54-208ENST00000461520 C12orf76Q8N812 135 aaPredicted RBP7.99□□□□□ -1.13
USP54-208ENST00000461520 FBXO18Q8NFZ0 1043 aa7.99□□□□□ -1.13
USP54-208ENST00000461520 ERMNQ8TAM6 284 aa7.99□□□□□ -1.13
USP54-208ENST00000461520 ATOH1Q92858 354 aaPredicted RBP7.99□□□□□ -1.13
USP54-208ENST00000461520 ZSCAN31Q96LW9 406 aaPredicted RBP7.99□□□□□ -1.13
USP54-208ENST00000461520 RPS6KC1Q96S38 1066 aa7.99□□□□□ -1.13
USP54-208ENST00000461520 GAD1Q99259 594 aa7.99□□□□□ -1.13
USP54-208ENST00000461520 HERC2P3Q9BVR0 1158 aa7.99□□□□□ -1.13
USP54-208ENST00000461520 SFXN1Q9H9B4 322 aa7.99□□□□□ -1.13
USP54-208ENST00000461520 PRMT7Q9NVM4 692 aaPredicted RBP7.99□□□□□ -1.13
USP54-208ENST00000461520 MARCH5Q9NX47 278 aa7.99□□□□□ -1.13
USP54-208ENST00000461520 DPP7Q9UHL4 492 aa7.99□□□□□ -1.13
USP54-208ENST00000461520 CDH22Q9UJ99 828 aa7.99□□□□□ -1.13
USP54-208ENST00000461520 SORCS3Q9UPU3 1222 aa7.99□□□□□ -1.13
USP54-208ENST00000461520 PRG3Q9Y2Y8 225 aaPredicted RBP7.99□□□□□ -1.13
USP54-208ENST00000461520 HES2Q9Y543 173 aa7.99□□□□□ -1.13
USP54-208ENST00000461520 CFAP54Q96N23 3096 aa7.99□□□□□ -1.13
USP54-208ENST00000461520 ARID2Q68CP9 1835 aa7.99□□□□□ -1.13
USP54-208ENST00000461520 A0A087WWV3 80 aa7.98□□□□□ -1.13
USP54-208ENST00000461520 TCRBV5S2A0A599 114 aa7.98□□□□□ -1.13
USP54-208ENST00000461520 LRRIQ4A6NIV6 560 aa7.98□□□□□ -1.13
USP54-208ENST00000461520 B4GALT5O43286 388 aa7.98□□□□□ -1.13
USP54-208ENST00000461520 MED24O75448 989 aa7.98□□□□□ -1.13
USP54-208ENST00000461520 TADA3O75528 432 aa7.98□□□□□ -1.13
USP54-208ENST00000461520 C1RP00736 705 aa7.98□□□□□ -1.13
USP54-208ENST00000461520 WEE2P0C1S8 567 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms