RNA–Protein interactions for RNA: ENST00000457942.1

CHCHD3-204, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 4

Gene CHCHD3, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-204ENST00000457942 GTF2H1P32780 548 aa16.6■□□□□ 0.25
CHCHD3-204ENST00000457942 ATP5C1P36542 298 aaKnown RBP16.6■□□□□ 0.25
CHCHD3-204ENST00000457942 GRIA2P42262 883 aa16.6■□□□□ 0.25
CHCHD3-204ENST00000457942 PREPLQ4J6C6 727 aaPredicted RBP16.6■□□□□ 0.25
CHCHD3-204ENST00000457942 USP39Q53GS9 565 aaKnown RBP16.6■□□□□ 0.25
CHCHD3-204ENST00000457942 LRSAM1Q6UWE0 723 aa16.6■□□□□ 0.25
CHCHD3-204ENST00000457942 SFTPA1Q8IWL2 248 aa16.6■□□□□ 0.25
CHCHD3-204ENST00000457942 TXNDC5Q8NBS9 432 aaKnown RBP16.6■□□□□ 0.25
CHCHD3-204ENST00000457942 FBXL13Q8NEE6 735 aa16.6■□□□□ 0.25
CHCHD3-204ENST00000457942 HEXIM2Q96MH2 286 aaKnown RBP16.6■□□□□ 0.25
CHCHD3-204ENST00000457942 EBF1Q9UH73 591 aa16.6■□□□□ 0.25
CHCHD3-204ENST00000457942 SCML2Q9UQR0 700 aa16.6■□□□□ 0.25
CHCHD3-204ENST00000457942 PCDHA5Q9Y5H7 936 aa16.6■□□□□ 0.25
CHCHD3-204ENST00000457942 GCN1Q92616 2671 aaKnown RBP16.59■□□□□ 0.25
CHCHD3-204ENST00000457942 A0A1W2PQH9 124 aa16.59■□□□□ 0.25
CHCHD3-204ENST00000457942 TBC1D3BA6NDS4 549 aa16.59■□□□□ 0.25
CHCHD3-204ENST00000457942 TBX18O95935 607 aa16.59■□□□□ 0.25
CHCHD3-204ENST00000457942 RARGP13631 454 aa16.59■□□□□ 0.25
CHCHD3-204ENST00000457942 CSRP1P21291 193 aaKnown RBP16.59■□□□□ 0.25
CHCHD3-204ENST00000457942 PGFP49763 221 aa16.59■□□□□ 0.25
CHCHD3-204ENST00000457942 TRIM61Q5EBN2 209 aa16.59■□□□□ 0.25
CHCHD3-204ENST00000457942 EOGTQ5NDL2 527 aa16.59■□□□□ 0.25
CHCHD3-204ENST00000457942 C10orf120Q5SQS8 335 aa16.59■□□□□ 0.25
CHCHD3-204ENST00000457942 NUDT18Q6ZVK8 323 aa16.59■□□□□ 0.25
CHCHD3-204ENST00000457942 TTC39CQ8N584 583 aa16.59■□□□□ 0.25
CHCHD3-204ENST00000457942 MDGA1Q8NFP4 955 aa16.59■□□□□ 0.25
CHCHD3-204ENST00000457942 RLN3Q8WXF3 142 aa16.59■□□□□ 0.25
CHCHD3-204ENST00000457942 SMARCE1Q969G3 411 aa16.59■□□□□ 0.25
CHCHD3-204ENST00000457942 WBP2Q969T9 261 aa16.59■□□□□ 0.25
CHCHD3-204ENST00000457942 PNPLA8Q9NP80 782 aa16.59■□□□□ 0.25
CHCHD3-204ENST00000457942 POLMQ9NP87 494 aaPredicted RBP16.59■□□□□ 0.25
CHCHD3-204ENST00000457942 ZDHHC4Q9NPG8 344 aa16.59■□□□□ 0.25
CHCHD3-204ENST00000457942 SPHK2Q9NRA0 654 aa16.59■□□□□ 0.25
CHCHD3-204ENST00000457942 DEC1Q9P2X7 70 aa16.59■□□□□ 0.25
CHCHD3-204ENST00000457942 HOOK1Q9UJC3 728 aaKnown RBP16.59■□□□□ 0.25
CHCHD3-204ENST00000457942 NAGPAQ9UK23 515 aa16.59■□□□□ 0.25
CHCHD3-204ENST00000457942 LOC400499M0QZD8 3231 aa16.59■□□□□ 0.25
CHCHD3-204ENST00000457942 THADAQ6YHU6 1953 aa16.58■□□□□ 0.25
CHCHD3-204ENST00000457942 NEDD8-MDP1E9PL57 170 aa16.58■□□□□ 0.24
CHCHD3-204ENST00000457942 MDM4O15151 490 aa16.58■□□□□ 0.24
CHCHD3-204ENST00000457942 PRCPP42785 496 aa16.58■□□□□ 0.24
CHCHD3-204ENST00000457942 NUCB2P80303 420 aa16.58■□□□□ 0.24
CHCHD3-204ENST00000457942 SIM1P81133 766 aaPredicted RBP16.58■□□□□ 0.24
CHCHD3-204ENST00000457942 MESP2Q0VG99 397 aa16.58■□□□□ 0.24
CHCHD3-204ENST00000457942 CRY1Q16526 586 aa16.58■□□□□ 0.24
CHCHD3-204ENST00000457942 C10orf76Q5T2E6 689 aa16.58■□□□□ 0.24
CHCHD3-204ENST00000457942 PPP1R26Q5T8A7 1209 aaPredicted RBP16.58■□□□□ 0.24
CHCHD3-204ENST00000457942 ZNF658Q5TYW1 1059 aaPredicted RBP16.58■□□□□ 0.24
CHCHD3-204ENST00000457942 TADA2BQ86TJ2 420 aa16.58■□□□□ 0.24
CHCHD3-204ENST00000457942 C11orf74Q86VG3 221 aa16.58■□□□□ 0.24
CHCHD3-204ENST00000457942 FMR1NBQ8N0W7 255 aaPredicted RBP16.58■□□□□ 0.24
CHCHD3-204ENST00000457942 PGBD3Q8N328 593 aa16.58■□□□□ 0.24
CHCHD3-204ENST00000457942 WHAMMQ8TF30 809 aa16.58■□□□□ 0.24
CHCHD3-204ENST00000457942 SEMA4DQ92854 862 aa16.58■□□□□ 0.24
CHCHD3-204ENST00000457942 SPACA7Q96KW9 195 aa16.58■□□□□ 0.24
CHCHD3-204ENST00000457942 CNOT6LQ96LI5 555 aaKnown RBP16.58■□□□□ 0.24
CHCHD3-204ENST00000457942 DUSP16Q9BY84 665 aa16.58■□□□□ 0.24
CHCHD3-204ENST00000457942 NMUR1Q9HB89 426 aa16.58■□□□□ 0.24
CHCHD3-204ENST00000457942 CYLDQ9NQC7 956 aa16.58■□□□□ 0.24
CHCHD3-204ENST00000457942 RAB20Q9NX57 234 aa16.58■□□□□ 0.24
CHCHD3-204ENST00000457942 NUDT5Q9UKK9 219 aa16.58■□□□□ 0.24
CHCHD3-204ENST00000457942 MYO18AQ92614 2054 aaKnown RBP16.57■□□□□ 0.24
CHCHD3-204ENST00000457942 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.57■□□□□ 0.24
CHCHD3-204ENST00000457942 HHLA1C9JL84 531 aa16.57■□□□□ 0.24
CHCHD3-204ENST00000457942 SGK1O00141 431 aa16.57■□□□□ 0.24
CHCHD3-204ENST00000457942 SLC16A3O15427 465 aaKnown RBP16.57■□□□□ 0.24
CHCHD3-204ENST00000457942 HOXC11O43248 304 aaPredicted RBP16.57■□□□□ 0.24
CHCHD3-204ENST00000457942 TULP3O75386 442 aa16.57■□□□□ 0.24
CHCHD3-204ENST00000457942 RALAP11233 206 aa16.57■□□□□ 0.24
CHCHD3-204ENST00000457942 TNFRSF4P43489 277 aa16.57■□□□□ 0.24
CHCHD3-204ENST00000457942 SLC8A3P57103 927 aa16.57■□□□□ 0.24
CHCHD3-204ENST00000457942 STIM1Q13586 685 aa16.57■□□□□ 0.24
CHCHD3-204ENST00000457942 HSF5Q4G112 596 aaPredicted RBP16.57■□□□□ 0.24
CHCHD3-204ENST00000457942 EMC10Q5UCC4 262 aa16.57■□□□□ 0.24
CHCHD3-204ENST00000457942 GRAMD4Q6IC98 578 aa16.57■□□□□ 0.24
CHCHD3-204ENST00000457942 C19orf48Q6RUI8 117 aa16.57■□□□□ 0.24
CHCHD3-204ENST00000457942 TPGS1Q6ZTW0 290 aa16.57■□□□□ 0.24
CHCHD3-204ENST00000457942 TMEM25Q86YD3 366 aa16.57■□□□□ 0.24
CHCHD3-204ENST00000457942 MIB1Q86YT6 1006 aa16.57■□□□□ 0.24
CHCHD3-204ENST00000457942 TMEFF1Q8IYR6 380 aa16.57■□□□□ 0.24
CHCHD3-204ENST00000457942 FRMD1Q8N878 549 aa16.57■□□□□ 0.24
CHCHD3-204ENST00000457942 ZNF513Q8N8E2 541 aaPredicted RBP16.57■□□□□ 0.24
CHCHD3-204ENST00000457942 IL17RCQ8NAC3 791 aa16.57■□□□□ 0.24
CHCHD3-204ENST00000457942 HMGB4Q8WW32 186 aa16.57■□□□□ 0.24
CHCHD3-204ENST00000457942 ERCC4Q92889 916 aaPredicted RBP16.57■□□□□ 0.24
CHCHD3-204ENST00000457942 GSDMAQ96QA5 445 aa16.57■□□□□ 0.24
CHCHD3-204ENST00000457942 XPO6Q96QU8 1125 aaKnown RBP16.57■□□□□ 0.24
CHCHD3-204ENST00000457942 ARID3AQ99856 593 aa16.57■□□□□ 0.24
CHCHD3-204ENST00000457942 BBS2Q9BXC9 721 aa16.57■□□□□ 0.24
CHCHD3-204ENST00000457942 KLF16Q9BXK1 252 aaPredicted RBP16.57■□□□□ 0.24
CHCHD3-204ENST00000457942 CISHQ9NSE2 258 aa16.57■□□□□ 0.24
CHCHD3-204ENST00000457942 DNAJC17Q9NVM6 304 aaKnown RBP16.57■□□□□ 0.24
CHCHD3-204ENST00000457942 OSER1Q9NX31 292 aa16.57■□□□□ 0.24
CHCHD3-204ENST00000457942 RASAL2Q9UJF2 1139 aa16.57■□□□□ 0.24
CHCHD3-204ENST00000457942 DNMT3LQ9UJW3 386 aa16.57■□□□□ 0.24
CHCHD3-204ENST00000457942 TCRBV21S2A2A0A5A6 115 aa16.56■□□□□ 0.24
CHCHD3-204ENST00000457942 CFIP05156 583 aa16.56■□□□□ 0.24
CHCHD3-204ENST00000457942 ENGP17813 658 aa16.56■□□□□ 0.24
CHCHD3-204ENST00000457942 PTGER3P43115 390 aa16.56■□□□□ 0.24
CHCHD3-204ENST00000457942 PSEN1P49768 467 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms