RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 ZNF592Q92610 1267 aa11.49□□□□□ -0.57
SCN9A-205ENST00000454569 PEBP4Q96S96 227 aa11.49□□□□□ -0.57
SCN9A-205ENST00000454569 PSMB7Q99436 277 aa11.49□□□□□ -0.57
SCN9A-205ENST00000454569 IL21Q9HBE4 155 aa11.49□□□□□ -0.57
SCN9A-205ENST00000454569 ANLNQ9NQW6 1124 aa11.49□□□□□ -0.57
SCN9A-205ENST00000454569 MAN1C1Q9NR34 630 aa11.49□□□□□ -0.57
SCN9A-205ENST00000454569 TMPRSS4Q9NRS4 437 aa11.49□□□□□ -0.57
SCN9A-205ENST00000454569 HELZP42694 1942 aaKnown RBP11.48□□□□□ -0.57
SCN9A-205ENST00000454569 I6L893 689 aaPredicted RBP11.48□□□□□ -0.57
SCN9A-205ENST00000454569 HSF2BPO75031 334 aa11.48□□□□□ -0.57
SCN9A-205ENST00000454569 SRGAP2O75044 1071 aa11.48□□□□□ -0.57
SCN9A-205ENST00000454569 LRCH4O75427 683 aa11.48□□□□□ -0.57
SCN9A-205ENST00000454569 DAB1O75553 588 aa11.48□□□□□ -0.57
SCN9A-205ENST00000454569 ZDHHC11BP0C7U3 371 aa11.48□□□□□ -0.57
SCN9A-205ENST00000454569 GJA1P17302 382 aa11.48□□□□□ -0.57
SCN9A-205ENST00000454569 MATKP42679 507 aa11.48□□□□□ -0.57
SCN9A-205ENST00000454569 ALDH1A3P47895 512 aa11.48□□□□□ -0.57
SCN9A-205ENST00000454569 DUSP6Q16828 381 aa11.48□□□□□ -0.57
SCN9A-205ENST00000454569 C11orf63Q6NUN7 778 aa11.48□□□□□ -0.57
SCN9A-205ENST00000454569 AADACL2Q6P093 401 aa11.48□□□□□ -0.57
SCN9A-205ENST00000454569 CC2D1AQ6P1N0 951 aaPredicted RBP11.48□□□□□ -0.57
SCN9A-205ENST00000454569 BNIPLQ7Z465 357 aa11.48□□□□□ -0.57
SCN9A-205ENST00000454569 TRIM58Q8NG06 486 aa11.48□□□□□ -0.57
SCN9A-205ENST00000454569 IRGQQ8WZA9 623 aa11.48□□□□□ -0.57
SCN9A-205ENST00000454569 ALG3Q92685 438 aa11.48□□□□□ -0.57
SCN9A-205ENST00000454569 CASP10Q92851 521 aa11.48□□□□□ -0.57
SCN9A-205ENST00000454569 FBXO32Q969P5 355 aa11.48□□□□□ -0.57
SCN9A-205ENST00000454569 NT5C3BQ969T7 300 aa11.48□□□□□ -0.57
SCN9A-205ENST00000454569 ACSF2Q96CM8 615 aaPredicted RBP11.48□□□□□ -0.57
SCN9A-205ENST00000454569 MRPL38Q96DV4 380 aaKnown RBP11.48□□□□□ -0.57
SCN9A-205ENST00000454569 FAM161BQ96MY7 647 aa11.48□□□□□ -0.57
SCN9A-205ENST00000454569 NPY6RQ99463 290 aa11.48□□□□□ -0.57
SCN9A-205ENST00000454569 IGFLR1Q9H665 355 aa11.48□□□□□ -0.57
SCN9A-205ENST00000454569 TLE6Q9H808 572 aa11.48□□□□□ -0.57
SCN9A-205ENST00000454569 POPDC2Q9HBU9 364 aa11.48□□□□□ -0.57
SCN9A-205ENST00000454569 ASNSD1Q9NWL6 643 aa11.48□□□□□ -0.57
SCN9A-205ENST00000454569 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.48□□□□□ -0.57
SCN9A-205ENST00000454569 IP6K2Q9UHH9 426 aa11.48□□□□□ -0.57
SCN9A-205ENST00000454569 SFMBT1Q9UHJ3 866 aa11.48□□□□□ -0.57
SCN9A-205ENST00000454569 CDH22Q9UJ99 828 aa11.48□□□□□ -0.57
SCN9A-205ENST00000454569 NUP205Q92621 2012 aa11.48□□□□□ -0.57
SCN9A-205ENST00000454569 MYOFQ9NZM1 2061 aa11.48□□□□□ -0.57
SCN9A-205ENST00000454569 SYNJ2BP-COX16A0A087WUM0 186 aa11.47□□□□□ -0.57
SCN9A-205ENST00000454569 RTN3O95197 1032 aaPredicted RBP11.47□□□□□ -0.57
SCN9A-205ENST00000454569 GLP2RO95838 553 aa11.47□□□□□ -0.57
SCN9A-205ENST00000454569 F11P03951 625 aa11.47□□□□□ -0.57
SCN9A-205ENST00000454569 TUBB4AP04350 444 aa11.47□□□□□ -0.57
SCN9A-205ENST00000454569 NCAM1P13591 858 aa11.47□□□□□ -0.57
SCN9A-205ENST00000454569 CXCR5P32302 372 aa11.47□□□□□ -0.57
SCN9A-205ENST00000454569 CCR2P41597 374 aa11.47□□□□□ -0.57
SCN9A-205ENST00000454569 PEX5P50542 639 aa11.47□□□□□ -0.57
SCN9A-205ENST00000454569 HDAC4P56524 1084 aa11.47□□□□□ -0.57
SCN9A-205ENST00000454569 SNX16P57768 344 aa11.47□□□□□ -0.57
SCN9A-205ENST00000454569 NTHL1P78549 312 aa11.47□□□□□ -0.57
SCN9A-205ENST00000454569 SKIV2LQ15477 1246 aaKnown RBP11.47□□□□□ -0.57
SCN9A-205ENST00000454569 TCEAL5Q5H9L2 206 aa11.47□□□□□ -0.57
SCN9A-205ENST00000454569 DCAF12L1Q5VU92 463 aa11.47□□□□□ -0.57
SCN9A-205ENST00000454569 PDE12Q6L8Q7 609 aaKnown RBP11.47□□□□□ -0.57
SCN9A-205ENST00000454569 GAREM2Q75VX8 874 aa11.47□□□□□ -0.57
SCN9A-205ENST00000454569 ARCQ7LC44 396 aa11.47□□□□□ -0.57
SCN9A-205ENST00000454569 PEX26Q7Z412 305 aa11.47□□□□□ -0.57
SCN9A-205ENST00000454569 ANKS1BQ7Z6G8 1248 aa11.47□□□□□ -0.57
SCN9A-205ENST00000454569 TMC8Q8IU68 726 aa11.47□□□□□ -0.57
SCN9A-205ENST00000454569 FNIP1Q8TF40 1166 aa11.47□□□□□ -0.57
SCN9A-205ENST00000454569 FAM172AQ8WUF8 416 aa11.47□□□□□ -0.57
SCN9A-205ENST00000454569 CENPIQ92674 756 aaPredicted RBP11.47□□□□□ -0.57
SCN9A-205ENST00000454569 PSMG2Q969U7 264 aa11.47□□□□□ -0.57
SCN9A-205ENST00000454569 ZNF707Q96C28 371 aaPredicted RBP11.47□□□□□ -0.57
SCN9A-205ENST00000454569 HES6Q96HZ4 224 aa11.47□□□□□ -0.57
SCN9A-205ENST00000454569 MYRFLQ96LU7 910 aa11.47□□□□□ -0.57
SCN9A-205ENST00000454569 CNPY3Q9BT09 278 aa11.47□□□□□ -0.57
SCN9A-205ENST00000454569 LMAN2LQ9H0V9 348 aa11.47□□□□□ -0.57
SCN9A-205ENST00000454569 FBXO44Q9H4M3 255 aa11.47□□□□□ -0.57
SCN9A-205ENST00000454569 CCSER2Q9H7U1 834 aa11.47□□□□□ -0.57
SCN9A-205ENST00000454569 KLHL11Q9NVR0 708 aa11.47□□□□□ -0.57
SCN9A-205ENST00000454569 EHD2Q9NZN4 543 aa11.47□□□□□ -0.57
SCN9A-205ENST00000454569 COX16Q9P0S2 106 aa11.47□□□□□ -0.57
SCN9A-205ENST00000454569 PCSK1NQ9UHG2 260 aa11.47□□□□□ -0.57
SCN9A-205ENST00000454569 DOCK8Q8NF50 2099 aa11.47□□□□□ -0.57
SCN9A-205ENST00000454569 ZNF840PA6NDX5 716 aa11.46□□□□□ -0.57
SCN9A-205ENST00000454569 ZNF185O15231 689 aa11.46□□□□□ -0.57
SCN9A-205ENST00000454569 MSI1O43347 362 aaKnown RBP11.46□□□□□ -0.57
SCN9A-205ENST00000454569 GLI1P08151 1106 aa11.46□□□□□ -0.57
SCN9A-205ENST00000454569 CSH1P0DML2 217 aa11.46□□□□□ -0.57
SCN9A-205ENST00000454569 CSH2P0DML3 217 aa11.46□□□□□ -0.57
SCN9A-205ENST00000454569 RARGP13631 454 aa11.46□□□□□ -0.57
SCN9A-205ENST00000454569 MIPP30301 263 aa11.46□□□□□ -0.57
SCN9A-205ENST00000454569 SDC4P31431 198 aa11.46□□□□□ -0.57
SCN9A-205ENST00000454569 NOS2P35228 1153 aa11.46□□□□□ -0.57
SCN9A-205ENST00000454569 PTPN9P43378 593 aa11.46□□□□□ -0.57
SCN9A-205ENST00000454569 SULT1E1P49888 294 aa11.46□□□□□ -0.57
SCN9A-205ENST00000454569 EPHB3P54753 998 aa11.46□□□□□ -0.57
SCN9A-205ENST00000454569 AMPD2Q01433 879 aa11.46□□□□□ -0.57
SCN9A-205ENST00000454569 SLC25A11Q02978 314 aaKnown RBP11.46□□□□□ -0.57
SCN9A-205ENST00000454569 HYAL1Q12794 435 aa11.46□□□□□ -0.57
SCN9A-205ENST00000454569 EIF4EBP2Q13542 120 aaPredicted RBP11.46□□□□□ -0.57
SCN9A-205ENST00000454569 IFI16Q16666 785 aaKnown RBP11.46□□□□□ -0.57
SCN9A-205ENST00000454569 PPM1LQ5SGD2 360 aa11.46□□□□□ -0.57
SCN9A-205ENST00000454569 BTBD8Q5XKL5 378 aa11.46□□□□□ -0.57
SCN9A-205ENST00000454569 TAC4Q86UU9 113 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms