RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 MFSD5Q6N075 450 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 ARMCX6Q7L4S7 300 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 PIWIL4Q7Z3Z4 852 aaKnown RBP7.39□□□□□ -1.23
VPS53-204ENST00000437048 LZTR1Q8N653 840 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 HEY2Q9UBP5 337 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 NLRP1Q9C000 1473 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 PRKCQQ04759 706 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 CTDSPL2Q05D32 466 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 EPHA7Q15375 998 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 EPC2Q52LR7 807 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 OR8H2Q8N162 312 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 CCDC185Q8N715 623 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 TSPAN18Q96SJ8 248 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 JMJD4Q9H9V9 463 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 TRIM17Q9Y577 477 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 PIPSLA2A3N6 862 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 BCLAF3A2AJT9 711 aaKnown RBP7.39□□□□□ -1.23
VPS53-204ENST00000437048 GALCP54803 685 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 LHFPL3Q86UP9 236 aa7.39□□□□□ -1.23
VPS53-204ENST00000437048 OXNAD1Q96HP4 312 aaPredicted RBP7.39□□□□□ -1.23
VPS53-204ENST00000437048 INTS2Q9H0H0 1204 aaKnown RBP7.39□□□□□ -1.23
VPS53-204ENST00000437048 NOL11Q9H8H0 719 aaKnown RBP7.39□□□□□ -1.23
VPS53-204ENST00000437048 ZC3H13Q5T200 1668 aaKnown RBP7.39□□□□□ -1.23
VPS53-204ENST00000437048 SPDYE5A6NIY4 337 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 MYL12BO14950 172 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 SERPINA1P01009 418 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 IFNA7P01567 189 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 CASP5P51878 434 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 SPDYE7PQ495Y7 208 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 FBXO43Q4G163 708 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 GET4Q7L5D6 327 aaPredicted RBP7.38□□□□□ -1.23
VPS53-204ENST00000437048 CENPLQ8N0S6 344 aaPredicted RBP7.38□□□□□ -1.23
VPS53-204ENST00000437048 TCAIMQ8N3R3 496 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 SRFBP1Q8NEF9 429 aaKnown RBP7.38□□□□□ -1.23
VPS53-204ENST00000437048 PLEKHF1Q96S99 279 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 C17orf80Q9BSJ5 609 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 ACOT9Q9Y305 439 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 CLTCL1P53675 1640 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 RTN3O95197 1032 aaPredicted RBP7.38□□□□□ -1.23
VPS53-204ENST00000437048 APOC1P02654 83 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 HMBSP08397 361 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 CYP2C18P33260 490 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 SLC18A1P54219 525 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 GTF2H3Q13889 308 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 FAM102AQ5T9C2 384 aaPredicted RBP7.38□□□□□ -1.23
VPS53-204ENST00000437048 PLET1Q6UQ28 207 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 TAS2R42Q7RTR8 314 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 TTC29Q8NA56 475 aaPredicted RBP7.38□□□□□ -1.23
VPS53-204ENST00000437048 PGBD4Q96DM1 585 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 EMILIN2Q9BXX0 1053 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 AP5M1Q9H0R1 490 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 ADPRHL2Q9NX46 363 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 UPB1Q9UBR1 384 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 NAGPAQ9UK23 515 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 QSOX1O00391 747 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 PGK2P07205 417 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 CYP2D6P10635 497 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 TPI1P60174 286 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 PUDPQ08623 228 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 SLC12A1Q13621 1099 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 ATP6AP1LQ52LC2 224 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 RP9Q8TA86 221 aaKnown RBP7.38□□□□□ -1.23
VPS53-204ENST00000437048 SUN5Q8TC36 379 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 TGFBRAP1Q8WUH2 860 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 KIFC1Q9BW19 673 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 SLC13A1Q9BZW2 595 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 CASS4Q9NQ75 786 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 GPC3P51654 580 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 DYNLT1P63172 113 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 RBBP7Q16576 425 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 ZFP69Q49AA0 526 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 SLC44A2Q8IWA5 706 aaPredicted RBP7.38□□□□□ -1.23
VPS53-204ENST00000437048 RIT2Q99578 217 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 TAS2R1Q9NYW7 299 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 ARHGAP28Q9P2N2 729 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 C2orf81A6NN90 581 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 AIM2O14862 343 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 RAD51CO43502 376 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 PSMG1O95456 288 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 SMCO1Q147U7 214 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 PDXDC2PQ6P474 469 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 POLNQ7Z5Q5 900 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 TBC1D21Q8IYX1 336 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 TUBA1CQ9BQE3 449 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 SNX13Q9Y5W8 968 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 CDC42P60953 191 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 PRKG1Q13976 671 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 SNRNP48Q6IEG0 339 aaKnown RBP7.38□□□□□ -1.23
VPS53-204ENST00000437048 LPAR1Q92633 364 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 RAB6BQ9NRW1 208 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 ERGIC3Q9Y282 383 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 USP6P35125 1406 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 TULP2O00295 520 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 SEC24AO95486 1093 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 NMT1P30419 496 aaKnown RBP7.38□□□□□ -1.23
VPS53-204ENST00000437048 KCNA1Q09470 495 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 LPIN1Q14693 890 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 PLCL1Q15111 1095 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 KLHL17Q6TDP4 642 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 SLC35G2Q8TBE7 412 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms