RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 KNTC1P50748 2209 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 PNPLA6Q8IY17 1366 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 NKRFO15226 690 aaKnown RBP eCLIP12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 MFSD10Q14728 455 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 MKNK1Q9BUB5 465 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 FICDQ9BVA6 458 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 THAP2Q9H0W7 228 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 CYP4F12Q9HCS2 524 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 LZTS1Q9Y250 596 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 SSU72P8A0A1W2PR75 194 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 NDUFS2O75306 463 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 CCDC130P13994 396 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 LUZP2Q86TE4 346 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 SYTL1Q8IYJ3 562 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 KCNK16Q96T55 309 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 MRPL42Q9Y6G3 142 aaKnown RBP12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 ECM29Q5VYK3 1845 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 SNTNA6NMZ2 147 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 CYP7B1O75881 506 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 ITGB6P18564 788 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 DSG1Q02413 1049 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 CYP4Z1Q86W10 505 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 EDEM1Q92611 657 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 YIPF3Q9GZM5 350 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 SOX6P35712 828 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 KCNJ1P48048 391 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 NCF4Q15080 339 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 NOL9Q5SY16 702 aaKnown RBP12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 NT5DC3Q86UY8 548 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 CGRRF1Q99675 332 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 HSMCR30P0CW71 290 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 KLRC1P26715 233 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 POU6F1Q14863 301 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 BOLA3Q53S33 107 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 FBXO47Q5MNV8 452 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 GRIN3AQ8TCU5 1115 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 BBS2Q9BXC9 721 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 NUDT14O95848 222 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 PPP2R1BP30154 601 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 BST2Q10589 180 aaKnown RBP12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 SETMARQ53H47 684 aaPredicted RBP12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 ELOVL6Q9H5J4 265 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 SCN3BQ9NY72 215 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 TRPC4Q9UBN4 977 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 SMAPO00193 183 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 ALBP02768 609 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 TARSP26639 723 aaKnown RBP12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 CASP4P49662 377 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 RIBC1Q8N443 379 aaPredicted RBP12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 CCDC126Q96EE4 140 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 CBWD1Q9BRT8 395 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 ARMC7Q9H6L4 198 aa12.4□□□□□ -0.42
CCDC88A-207ENST00000436346 TNS2Q63HR2 1409 aa12.4□□□□□ -0.43
CCDC88A-207ENST00000436346 A0A0A6YYK5 440 aaPredicted RBP12.4□□□□□ -0.43
CCDC88A-207ENST00000436346 A0A1B0GW55 424 aa12.4□□□□□ -0.43
CCDC88A-207ENST00000436346 NFIBO00712 420 aa12.4□□□□□ -0.43
CCDC88A-207ENST00000436346 DUX4L2P0CJ85 424 aa12.4□□□□□ -0.43
CCDC88A-207ENST00000436346 DUX4L3P0CJ86 424 aa12.4□□□□□ -0.43
CCDC88A-207ENST00000436346 DUX4L4P0CJ87 422 aa12.4□□□□□ -0.43
CCDC88A-207ENST00000436346 DUX4L5P0CJ88 424 aa12.4□□□□□ -0.43
CCDC88A-207ENST00000436346 DUX4L6P0CJ89 424 aa12.4□□□□□ -0.43
CCDC88A-207ENST00000436346 DUX4L7P0CJ90 424 aa12.4□□□□□ -0.43
CCDC88A-207ENST00000436346 IGFBP4P22692 258 aa12.4□□□□□ -0.43
CCDC88A-207ENST00000436346 DYNC1I2Q13409 638 aaKnown RBP12.4□□□□□ -0.43
CCDC88A-207ENST00000436346 TRPM8Q7Z2W7 1104 aa12.4□□□□□ -0.43
CCDC88A-207ENST00000436346 C16orf62Q7Z3J2 963 aa12.4□□□□□ -0.43
CCDC88A-207ENST00000436346 TRMT11Q7Z4G4 463 aaKnown RBP12.4□□□□□ -0.43
CCDC88A-207ENST00000436346 SOCS4Q8WXH5 440 aa12.4□□□□□ -0.43
CCDC88A-207ENST00000436346 FAM111AQ96PZ2 611 aa12.4□□□□□ -0.43
CCDC88A-207ENST00000436346 SENP6Q9GZR1 1112 aaPredicted RBP12.4□□□□□ -0.43
CCDC88A-207ENST00000436346 PIF1Q9H611 641 aa12.4□□□□□ -0.43
CCDC88A-207ENST00000436346 CAAP1Q9H8G2 361 aa12.4□□□□□ -0.43
CCDC88A-207ENST00000436346 DUX4Q9UBX2 424 aa12.4□□□□□ -0.43
CCDC88A-207ENST00000436346 NDOR1Q9UHB4 597 aa12.4□□□□□ -0.43
CCDC88A-207ENST00000436346 TK2O00142 265 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 POLR2EP19388 210 aaKnown RBP12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 MDH1P40925 334 aaKnown RBP12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 RENBPP51606 427 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 TKTL1P51854 596 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 C16orf72Q14CZ0 275 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 PPM1LQ5SGD2 360 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 DENND1BQ6P3S1 775 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 COL23A1Q86Y22 540 aaPredicted RBP12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 MAGED4Q96JG8 741 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 LRRC40Q9H9A6 602 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 WBP4O75554 376 aaKnown RBP12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 TPRP12270 2363 aaKnown RBP12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 H3BRB1 525 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 TIMM44O43615 452 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 CCR1P32246 355 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 HIRAP54198 1017 aaPredicted RBP12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 TGFB2P61812 414 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 SYN2Q92777 582 aaPredicted RBP12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 TUT1Q9H6E5 874 aaKnown RBP12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 IARS2Q9NSE4 1012 aaKnown RBP12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 RTN3O95197 1032 aaPredicted RBP12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 SREBF1P36956 1147 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 TBX4P57082 545 aa12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 BOP1Q14137 746 aaKnown RBP12.39□□□□□ -0.43
CCDC88A-207ENST00000436346 WDR49Q8IV35 697 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms