RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 ERMARDQ5T6L9 678 aa13.38□□□□□ -0.27
PTCH1-207ENST00000429896 PACSIN1Q9BY11 444 aa13.38□□□□□ -0.27
PTCH1-207ENST00000429896 SBF2Q86WG5 1849 aa13.38□□□□□ -0.27
PTCH1-207ENST00000429896 HNRNPCL2B2RXH8 293 aa13.38□□□□□ -0.27
PTCH1-207ENST00000429896 CCL16O15467 120 aa13.38□□□□□ -0.27
PTCH1-207ENST00000429896 HNRNPCL1O60812 293 aaKnown RBP13.38□□□□□ -0.27
PTCH1-207ENST00000429896 BAIAP3O94812 1187 aa13.38□□□□□ -0.27
PTCH1-207ENST00000429896 IQCF3P0C7M6 154 aa13.38□□□□□ -0.27
PTCH1-207ENST00000429896 KIF19Q2TAC6 998 aa13.38□□□□□ -0.27
PTCH1-207ENST00000429896 KCNT1Q5JUK3 1230 aa13.38□□□□□ -0.27
PTCH1-207ENST00000429896 SYDE1Q6ZW31 735 aaPredicted RBP13.38□□□□□ -0.27
PTCH1-207ENST00000429896 PIGZQ86VD9 579 aa13.38□□□□□ -0.27
PTCH1-207ENST00000429896 DAW1Q8N136 415 aa13.38□□□□□ -0.27
PTCH1-207ENST00000429896 SLC9A7Q96T83 725 aa13.38□□□□□ -0.27
PTCH1-207ENST00000429896 CSF2RAP15509 400 aa13.37□□□□□ -0.27
PTCH1-207ENST00000429896 DHX34Q14147 1143 aaKnown RBP13.37□□□□□ -0.27
PTCH1-207ENST00000429896 SMG7Q92540 1137 aaKnown RBP13.37□□□□□ -0.27
PTCH1-207ENST00000429896 RAPGEF5Q92565 580 aa13.37□□□□□ -0.27
PTCH1-207ENST00000429896 KRT35Q92764 455 aa13.37□□□□□ -0.27
PTCH1-207ENST00000429896 ZSWIM1Q9BR11 485 aa13.37□□□□□ -0.27
PTCH1-207ENST00000429896 ARHGAP20Q9P2F6 1191 aa13.37□□□□□ -0.27
PTCH1-207ENST00000429896 CLDN5O00501 218 aa13.37□□□□□ -0.27
PTCH1-207ENST00000429896 OR4Q2P0C623 313 aa13.37□□□□□ -0.27
PTCH1-207ENST00000429896 GHRHRQ02643 423 aa13.37□□□□□ -0.27
PTCH1-207ENST00000429896 LAMB3Q13751 1172 aa13.37□□□□□ -0.27
PTCH1-207ENST00000429896 C6orf118Q5T5N4 469 aa13.37□□□□□ -0.27
PTCH1-207ENST00000429896 LGI2Q8N0V4 545 aa13.37□□□□□ -0.27
PTCH1-207ENST00000429896 INTS9Q9NV88 658 aaKnown RBP13.37□□□□□ -0.27
PTCH1-207ENST00000429896 SNX12Q9UMY4 172 aa13.37□□□□□ -0.27
PTCH1-207ENST00000429896 GCKP35557 465 aa13.37□□□□□ -0.27
PTCH1-207ENST00000429896 ATAT1Q5SQI0 421 aa13.37□□□□□ -0.27
PTCH1-207ENST00000429896 TMA16Q96EY4 203 aaKnown RBP13.37□□□□□ -0.27
PTCH1-207ENST00000429896 FAM84AQ96KN4 292 aa13.37□□□□□ -0.27
PTCH1-207ENST00000429896 TAF1LQ8IZX4 1826 aa13.37□□□□□ -0.27
PTCH1-207ENST00000429896 ADGRA2Q96PE1 1338 aa13.37□□□□□ -0.27
PTCH1-207ENST00000429896 A0A0A6YYK5 440 aaPredicted RBP13.37□□□□□ -0.27
PTCH1-207ENST00000429896 LRRC10BA6NIK2 292 aa13.37□□□□□ -0.27
PTCH1-207ENST00000429896 NRP1O14786 923 aa13.37□□□□□ -0.27
PTCH1-207ENST00000429896 ZNF697Q5TEC3 545 aa13.37□□□□□ -0.27
PTCH1-207ENST00000429896 E4F1Q66K89 784 aaPredicted RBP13.37□□□□□ -0.27
PTCH1-207ENST00000429896 KCNT2Q6UVM3 1135 aa13.37□□□□□ -0.27
PTCH1-207ENST00000429896 VSTM1Q6UX27 236 aa13.37□□□□□ -0.27
PTCH1-207ENST00000429896 ZNF557Q8N988 423 aaPredicted RBP13.37□□□□□ -0.27
PTCH1-207ENST00000429896 ADAM32Q8TC27 787 aa13.37□□□□□ -0.27
PTCH1-207ENST00000429896 AGAP3Q96P47 875 aa13.37□□□□□ -0.27
PTCH1-207ENST00000429896 CYTH2Q99418 400 aa13.37□□□□□ -0.27
PTCH1-207ENST00000429896 HAUS8Q9BT25 410 aa13.37□□□□□ -0.27
PTCH1-207ENST00000429896 BCAP29Q9UHQ4 241 aa13.37□□□□□ -0.27
PTCH1-207ENST00000429896 FBXL5Q9UKA1 691 aa13.37□□□□□ -0.27
PTCH1-207ENST00000429896 XPO1O14980 1071 aaKnown RBP13.37□□□□□ -0.27
PTCH1-207ENST00000429896 PHF2O75151 1096 aa13.37□□□□□ -0.27
PTCH1-207ENST00000429896 STMN1P16949 149 aa13.37□□□□□ -0.27
PTCH1-207ENST00000429896 TKTP29401 623 aaKnown RBP13.37□□□□□ -0.27
PTCH1-207ENST00000429896 ENPEPQ07075 957 aa13.37□□□□□ -0.27
PTCH1-207ENST00000429896 BYSLQ13895 437 aaKnown RBP13.37□□□□□ -0.27
PTCH1-207ENST00000429896 STARD3Q14849 445 aa13.37□□□□□ -0.27
PTCH1-207ENST00000429896 FAM71AQ8IYT1 594 aa13.37□□□□□ -0.27
PTCH1-207ENST00000429896 FAF1Q9UNN5 650 aaPredicted RBP13.37□□□□□ -0.27
PTCH1-207ENST00000429896 MAPK7Q13164 816 aa13.36□□□□□ -0.27
PTCH1-207ENST00000429896 GTF2H3Q13889 308 aa13.36□□□□□ -0.27
PTCH1-207ENST00000429896 TARBP2Q15633 366 aaKnown RBP13.36□□□□□ -0.27
PTCH1-207ENST00000429896 RREB1Q92766 1687 aa13.36□□□□□ -0.27
PTCH1-207ENST00000429896 GABRR2P28476 465 aa13.36□□□□□ -0.27
PTCH1-207ENST00000429896 CENPCQ03188 943 aa13.36□□□□□ -0.27
PTCH1-207ENST00000429896 PCSK7Q16549 785 aa13.36□□□□□ -0.27
PTCH1-207ENST00000429896 VARS2Q5ST30 1063 aaKnown RBP13.36□□□□□ -0.27
PTCH1-207ENST00000429896 TBCBQ99426 244 aa13.36□□□□□ -0.27
PTCH1-207ENST00000429896 ACBD6Q9BR61 282 aa13.36□□□□□ -0.27
PTCH1-207ENST00000429896 NUDT5Q9UKK9 219 aa13.36□□□□□ -0.27
PTCH1-207ENST00000429896 PPP1R26Q5T8A7 1209 aaPredicted RBP13.36□□□□□ -0.27
PTCH1-207ENST00000429896 IZUMO3Q5VZ72 239 aa13.36□□□□□ -0.27
PTCH1-207ENST00000429896 GPR152Q8TDT2 470 aa13.36□□□□□ -0.27
PTCH1-207ENST00000429896 USP13Q92995 863 aaPredicted RBP13.36□□□□□ -0.27
PTCH1-207ENST00000429896 DCUN1D1Q96GG9 259 aa13.36□□□□□ -0.27
PTCH1-207ENST00000429896 CBX4O00257 560 aa13.36□□□□□ -0.27
PTCH1-207ENST00000429896 ATP4AP20648 1035 aa13.36□□□□□ -0.27
PTCH1-207ENST00000429896 GEMIN4P57678 1058 aaKnown RBP13.36□□□□□ -0.27
PTCH1-207ENST00000429896 SYCP2LQ5T4T6 812 aa13.36□□□□□ -0.27
PTCH1-207ENST00000429896 RASSF3Q86WH2 238 aa13.36□□□□□ -0.27
PTCH1-207ENST00000429896 C3orf20Q8ND61 904 aa13.36□□□□□ -0.27
PTCH1-207ENST00000429896 MYCBPAPQ8TBZ2 947 aa13.36□□□□□ -0.27
PTCH1-207ENST00000429896 ANKRD7Q92527 254 aa13.36□□□□□ -0.27
PTCH1-207ENST00000429896 EXOC1LA0A1B0GW35 172 aa13.36□□□□□ -0.27
PTCH1-207ENST00000429896 PITPNM1O00562 1244 aa13.36□□□□□ -0.27
PTCH1-207ENST00000429896 ATP9BO43861 1147 aa13.36□□□□□ -0.27
PTCH1-207ENST00000429896 LILRA4P59901 499 aa13.36□□□□□ -0.27
PTCH1-207ENST00000429896 HPS4Q9NQG7 708 aa13.36□□□□□ -0.27
PTCH1-207ENST00000429896 ASMTLO95671 621 aa13.36□□□□□ -0.27
PTCH1-207ENST00000429896 TIMP1P01033 207 aa13.36□□□□□ -0.27
PTCH1-207ENST00000429896 NOS2P35228 1153 aa13.36□□□□□ -0.27
PTCH1-207ENST00000429896 C12orf29Q8N999 325 aa13.36□□□□□ -0.27
PTCH1-207ENST00000429896 OR6P1Q8NGX9 317 aa13.36□□□□□ -0.27
PTCH1-207ENST00000429896 WDR48Q8TAF3 677 aa13.36□□□□□ -0.27
PTCH1-207ENST00000429896 EPS8L1Q8TE68 723 aa13.36□□□□□ -0.27
PTCH1-207ENST00000429896 C2orf15Q8WU43 125 aaKnown RBP13.36□□□□□ -0.27
PTCH1-207ENST00000429896 SHC3Q92529 594 aa13.36□□□□□ -0.27
PTCH1-207ENST00000429896 N4BP2L2Q92802 583 aaPredicted RBP13.36□□□□□ -0.27
PTCH1-207ENST00000429896 RIPOR3Q96MK2 946 aa13.36□□□□□ -0.27
PTCH1-207ENST00000429896 R3HDMLQ9H3Y0 253 aa13.36□□□□□ -0.27
PTCH1-207ENST00000429896 RGS18Q9NS28 235 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms