RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 TSPAN16Q9UKR8 245 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 MYH2Q9UKX2 1941 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 SPEF2Q9C093 1822 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 COL1A2P08123 1366 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 SMIM28A0A1B0GU29 152 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 NDUFS2O75306 463 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 PTPN1P18031 435 aaKnown RBP11.03□□□□□ -0.64
TCOF1-204ENST00000427724 RPL9P32969 192 aaKnown RBP11.03□□□□□ -0.64
TCOF1-204ENST00000427724 SMAD3P84022 425 aaKnown RBP11.03□□□□□ -0.64
TCOF1-204ENST00000427724 SKOR1P84550 965 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 HECTD3Q5T447 861 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 SPATA24Q86W54 205 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 MAP4K3Q8IVH8 894 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 NAT16Q8N8M0 369 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 KREMEN2Q8NCW0 462 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 FAM84AQ96KN4 292 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 CYTH2Q99418 400 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 WBP1LQ9NX94 342 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 MARCH2Q9P0N8 246 aa11.03□□□□□ -0.64
TCOF1-204ENST00000427724 ATP9BO43861 1147 aa11.02□□□□□ -0.64
TCOF1-204ENST00000427724 C8AP07357 584 aa11.02□□□□□ -0.64
TCOF1-204ENST00000427724 CCDC130P13994 396 aa11.02□□□□□ -0.64
TCOF1-204ENST00000427724 TBX4P57082 545 aa11.02□□□□□ -0.64
TCOF1-204ENST00000427724 SERPINA13PQ6UXR4 307 aa11.02□□□□□ -0.64
TCOF1-204ENST00000427724 TFAP2DQ7Z6R9 452 aa11.02□□□□□ -0.64
TCOF1-204ENST00000427724 PDIK1LQ8N165 341 aa11.02□□□□□ -0.64
TCOF1-204ENST00000427724 TMEM86AQ8N2M4 240 aa11.02□□□□□ -0.64
TCOF1-204ENST00000427724 ETNPPLQ8TBG4 499 aa11.02□□□□□ -0.64
TCOF1-204ENST00000427724 TMC2Q8TDI7 906 aa11.02□□□□□ -0.64
TCOF1-204ENST00000427724 DIS3LQ8TF46 1054 aaKnown RBP11.02□□□□□ -0.64
TCOF1-204ENST00000427724 SKA1Q96BD8 255 aa11.02□□□□□ -0.64
TCOF1-204ENST00000427724 GPR63Q9BZJ6 419 aa11.02□□□□□ -0.64
TCOF1-204ENST00000427724 TMEM120BA0PK00 339 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 ARHGAP42A6NI28 874 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 B4GALT4O60513 344 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 MAP3K6O95382 1288 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 IRX4P78413 519 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 MAP7D1Q3KQU3 841 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 SYCP2LQ5T4T6 812 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 IZUMO3Q5VZ72 239 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 HGSNATQ68CP4 663 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 PRSS55Q6UWB4 352 aaPredicted RBP11.02□□□□□ -0.65
TCOF1-204ENST00000427724 C16orf59Q7L2K0 433 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 RHOT1Q8IXI2 618 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 ATP11CQ8NB49 1132 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 CDC26Q8NHZ8 85 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 PIK3R5Q8WYR1 880 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 SNF8Q96H20 258 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 RAD9AQ99638 391 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 SEMA4AQ9H3S1 761 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 DLGAP2Q9P1A6 1054 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 TRAF3IP3Q9Y228 551 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 NCKAP1Q9Y2A7 1128 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 ROBO3Q96MS0 1386 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 CYP3A7-CYP3A51PA0A087WV96 503 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 MAPK13O15264 365 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 DDHD2O94830 711 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 SNUPNO95149 360 aaKnown RBP11.02□□□□□ -0.65
TCOF1-204ENST00000427724 USP17L7P0C7H9 530 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 MX2P20592 715 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 GPD1P21695 349 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 CYP3A7P24462 503 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 WASP42768 502 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 BST2Q10589 180 aaKnown RBP11.02□□□□□ -0.65
TCOF1-204ENST00000427724 GPS1Q13098 491 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 RPS6KA2Q15349 733 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 TMEM154Q6P9G4 183 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 NT5DC3Q86UY8 548 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 UNC45BQ8IWX7 931 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 TMEM161BQ8NDZ6 487 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 ATG4AQ8WYN0 398 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 VPS39Q96JC1 886 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 FGD4Q96M96 766 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 IKZF4Q9H2S9 585 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 NKX2-4Q9H2Z4 354 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 NHSL1Q5SYE7 1610 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 C5P01031 1676 aa11.02□□□□□ -0.65
TCOF1-204ENST00000427724 CCND1P24385 295 aa11.01□□□□□ -0.65
TCOF1-204ENST00000427724 SP2Q02086 613 aa11.01□□□□□ -0.65
TCOF1-204ENST00000427724 PDE1CQ14123 709 aaPredicted RBP11.01□□□□□ -0.65
TCOF1-204ENST00000427724 TCEA2Q15560 299 aa11.01□□□□□ -0.65
TCOF1-204ENST00000427724 TMC3Q7Z5M5 1100 aa11.01□□□□□ -0.65
TCOF1-204ENST00000427724 PCGF5Q86SE9 256 aa11.01□□□□□ -0.65
TCOF1-204ENST00000427724 NT5DC4Q86YG4 428 aa11.01□□□□□ -0.65
TCOF1-204ENST00000427724 TRIM48Q8IWZ4 208 aa11.01□□□□□ -0.65
TCOF1-204ENST00000427724 TEKT4Q8WW24 435 aa11.01□□□□□ -0.65
TCOF1-204ENST00000427724 B3GALT6Q96L58 329 aa11.01□□□□□ -0.65
TCOF1-204ENST00000427724 YIPF2Q9BWQ6 316 aa11.01□□□□□ -0.65
TCOF1-204ENST00000427724 KLC2Q9H0B6 622 aa11.01□□□□□ -0.65
TCOF1-204ENST00000427724 PLK2Q9NYY3 685 aa11.01□□□□□ -0.65
TCOF1-204ENST00000427724 E5RI56 91 aa11.01□□□□□ -0.65
TCOF1-204ENST00000427724 F9P00740 461 aa11.01□□□□□ -0.65
TCOF1-204ENST00000427724 ATP5BP06576 529 aaKnown RBP11.01□□□□□ -0.65
TCOF1-204ENST00000427724 SLC12A3P55017 1021 aa11.01□□□□□ -0.65
TCOF1-204ENST00000427724 IRF5Q13568 498 aa11.01□□□□□ -0.65
TCOF1-204ENST00000427724 ITPRIPL1Q6GPH6 555 aa11.01□□□□□ -0.65
TCOF1-204ENST00000427724 AADACL2Q6P093 401 aa11.01□□□□□ -0.65
TCOF1-204ENST00000427724 ARHGEF26Q96DR7 871 aa11.01□□□□□ -0.65
TCOF1-204ENST00000427724 MAGEB5Q9BZ81 275 aa11.01□□□□□ -0.65
TCOF1-204ENST00000427724 UBXN6Q9BZV1 441 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms