RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 HOMER3Q9NSC5 361 aa6.22□□□□□ -1.41
HMGB3-202ENST00000419110 TMLHEQ9NVH6 421 aa6.22□□□□□ -1.41
HMGB3-202ENST00000419110 TMEM51Q9NW97 253 aa6.22□□□□□ -1.41
HMGB3-202ENST00000419110 STIM2Q9P246 746 aa6.22□□□□□ -1.41
HMGB3-202ENST00000419110 ZMYND8Q9ULU4 1186 aaPredicted RBP6.22□□□□□ -1.41
HMGB3-202ENST00000419110 USP18Q9UMW8 372 aa6.22□□□□□ -1.41
HMGB3-202ENST00000419110 AP4E1Q9UPM8 1137 aa6.22□□□□□ -1.41
HMGB3-202ENST00000419110 INSL6Q9Y581 213 aa6.22□□□□□ -1.41
HMGB3-202ENST00000419110 C2orf16Q68DN1 1984 aa6.22□□□□□ -1.41
HMGB3-202ENST00000419110 CLUHO75153 1309 aa6.22□□□□□ -1.41
HMGB3-202ENST00000419110 CEP290O15078 2479 aa6.21□□□□□ -1.41
HMGB3-202ENST00000419110 CHD5Q8TDI0 1954 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 hCG_1818297A0A087WSY0 165 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 SYNJ2BP-COX16A0A087WUM0 186 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP6.21□□□□□ -1.42
HMGB3-202ENST00000419110 WDR27A2RRH5 827 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 ZNF487B1APH4 448 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 HHLA1C9JL84 531 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 PI4K2BG5E9Z4 385 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 H3BRJ5 948 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 C2CD2LO14523 706 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 PRRG1O14668 218 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 NDC80O14777 642 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 MCF2LO15068 1137 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 BEST1O76090 585 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 HEXIM1O94992 359 aaKnown RBP6.21□□□□□ -1.42
HMGB3-202ENST00000419110 ECEL1O95672 775 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 TRUB2O95900 331 aaKnown RBP6.21□□□□□ -1.42
HMGB3-202ENST00000419110 USP17L7P0C7H9 530 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 PYGMP11217 842 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 RALAP11233 206 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 NCAM1P13591 858 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 TCF4P15884 667 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 SYN1P17600 705 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 CYP2F1P24903 491 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 GBP1P32455 592 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 ARL4AP40617 200 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 PEX5P50542 639 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 ZNF135P52742 658 aaPredicted RBP6.21□□□□□ -1.42
HMGB3-202ENST00000419110 YWHAGP61981 247 aaKnown RBP eCLIP6.21□□□□□ -1.42
HMGB3-202ENST00000419110 HTRA4P83105 476 aaPredicted RBP6.21□□□□□ -1.42
HMGB3-202ENST00000419110 DR1Q01658 176 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 DEUP1Q05D60 604 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 MRPL58Q14197 206 aaKnown RBP6.21□□□□□ -1.42
HMGB3-202ENST00000419110 PDK2Q15119 407 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 TAF5Q15542 800 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 TAF12Q16514 161 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 ARL13BQ3SXY8 428 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 CCDC14Q49A88 953 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 BOLA3Q53S33 107 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 DCAF6Q58WW2 860 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 TMEM240Q5SV17 173 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 BTBD8Q5XKL5 378 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 TRNP1Q6NT89 227 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 SCYL2Q6P3W7 929 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 DENND5BQ6ZUT9 1274 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 BEND5Q7L4P6 421 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 MAATS1Q7Z4T9 603 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 TMCO2Q7Z6W1 182 aaPredicted RBP6.21□□□□□ -1.42
HMGB3-202ENST00000419110 TADA2BQ86TJ2 420 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 DDX53Q86TM3 631 aaKnown RBP6.21□□□□□ -1.42
HMGB3-202ENST00000419110 LRRTM3Q86VH5 581 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 RFX6Q8HWS3 928 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 PSTKQ8IV42 348 aaKnown RBP6.21□□□□□ -1.42
HMGB3-202ENST00000419110 NUP93Q8N1F7 819 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 PDZD8Q8NEN9 1154 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 SLC7A14Q8TBB6 771 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 PHOSPHO2Q8TCD6 241 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 RNF139Q8WU17 664 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 NTAN1Q96AB6 310 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 ACSF2Q96CM8 615 aaPredicted RBP6.21□□□□□ -1.42
HMGB3-202ENST00000419110 SPATA17Q96L03 361 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 PEBP4Q96S96 227 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 CDK5RAP1Q96SZ6 601 aaKnown RBP6.21□□□□□ -1.42
HMGB3-202ENST00000419110 KCNK16Q96T55 309 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 DDX23Q9BUQ8 820 aaKnown RBP6.21□□□□□ -1.42
HMGB3-202ENST00000419110 VN1R3Q9BXE9 311 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 AP1M1Q9BXS5 423 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 FRMD8P1Q9BZ68 369 aaPredicted RBP6.21□□□□□ -1.42
HMGB3-202ENST00000419110 DDX47Q9H0S4 455 aaKnown RBP6.21□□□□□ -1.42
HMGB3-202ENST00000419110 ZBP1Q9H171 429 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 SMOC2Q9H3U7 446 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 ENTPD7Q9NQZ7 604 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 MRPL17Q9NRX2 175 aaKnown RBP6.21□□□□□ -1.42
HMGB3-202ENST00000419110 CHST7Q9NS84 486 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 OLA1Q9NTK5 396 aaKnown RBP6.21□□□□□ -1.42
HMGB3-202ENST00000419110 TMEM30AQ9NV96 361 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 COMMD8Q9NX08 183 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 DDIT4Q9NX09 232 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 COX16Q9P0S2 106 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 RCOR3Q9P2K3 495 aaPredicted RBP6.21□□□□□ -1.42
HMGB3-202ENST00000419110 HSFX1Q9UBD0 423 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 AFF4Q9UHB7 1163 aaKnown RBP6.21□□□□□ -1.42
HMGB3-202ENST00000419110 PCSK1NQ9UHG2 260 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 SCML2Q9UQR0 700 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 YIPF1Q9Y548 306 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 NR2E3Q9Y5X4 410 aa6.21□□□□□ -1.42
HMGB3-202ENST00000419110 DENND4AQ7Z401 1863 aa6.2□□□□□ -1.42
HMGB3-202ENST00000419110 KIF26AQ9ULI4 1882 aaPredicted RBP6.2□□□□□ -1.42
HMGB3-202ENST00000419110 CCDC151A5D8V7 595 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms