RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 DNAI1Q9UI46 699 aa14.88□□□□□ -0.03
SF3B1-204ENST00000414963 CTAGE9A4FU28 777 aa14.87□□□□□ -0.03
SF3B1-204ENST00000414963 SOX1O00570 391 aaPredicted RBP14.87□□□□□ -0.03
SF3B1-204ENST00000414963 CCL16O15467 120 aa14.87□□□□□ -0.03
SF3B1-204ENST00000414963 SPOPO43791 374 aa14.87□□□□□ -0.03
SF3B1-204ENST00000414963 TADA3O75528 432 aa14.87□□□□□ -0.03
SF3B1-204ENST00000414963 PRLRP16471 622 aa14.87□□□□□ -0.03
SF3B1-204ENST00000414963 TFE3P19532 575 aaPredicted RBP14.87□□□□□ -0.03
SF3B1-204ENST00000414963 CASQ1P31415 396 aa14.87□□□□□ -0.03
SF3B1-204ENST00000414963 CTNNA1P35221 906 aaKnown RBP14.87□□□□□ -0.03
SF3B1-204ENST00000414963 HDAC4P56524 1084 aa14.87□□□□□ -0.03
SF3B1-204ENST00000414963 RPS6KA1Q15418 735 aa14.87□□□□□ -0.03
SF3B1-204ENST00000414963 C15orf59Q2T9L4 293 aaPredicted RBP14.87□□□□□ -0.03
SF3B1-204ENST00000414963 TCEAL5Q5H9L2 206 aa14.87□□□□□ -0.03
SF3B1-204ENST00000414963 SH3PXD2AQ5TCZ1 1133 aa14.87□□□□□ -0.03
SF3B1-204ENST00000414963 PAPD7Q5XG87 772 aaKnown RBP14.87□□□□□ -0.03
SF3B1-204ENST00000414963 TADA2BQ86TJ2 420 aa14.87□□□□□ -0.03
SF3B1-204ENST00000414963 CPNE8Q86YQ8 564 aa14.87□□□□□ -0.03
SF3B1-204ENST00000414963 DQX1Q8TE96 717 aaKnown RBP14.87□□□□□ -0.03
SF3B1-204ENST00000414963 RNF139Q8WU17 664 aa14.87□□□□□ -0.03
SF3B1-204ENST00000414963 FAM172AQ8WUF8 416 aa14.87□□□□□ -0.03
SF3B1-204ENST00000414963 ZNF707Q96C28 371 aaPredicted RBP14.87□□□□□ -0.03
SF3B1-204ENST00000414963 NAPGQ99747 312 aaPredicted RBP14.87□□□□□ -0.03
SF3B1-204ENST00000414963 ADAM33Q9BZ11 813 aa14.87□□□□□ -0.03
SF3B1-204ENST00000414963 HYOU1Q9Y4L1 999 aa14.87□□□□□ -0.03
SF3B1-204ENST00000414963 PCDHA3Q9Y5H8 950 aa14.87□□□□□ -0.03
SF3B1-204ENST00000414963 MTCH2Q9Y6C9 303 aa14.87□□□□□ -0.03
SF3B1-204ENST00000414963 MTCL1Q9Y4B5 1905 aaKnown RBP14.87□□□□□ -0.03
SF3B1-204ENST00000414963 CCDC195A0A1B0GUA6 201 aa14.86□□□□□ -0.03
SF3B1-204ENST00000414963 CCDC66A2RUB6 948 aa14.86□□□□□ -0.03
SF3B1-204ENST00000414963 SOBPA7XYQ1 873 aa14.86□□□□□ -0.03
SF3B1-204ENST00000414963 M0QYT0 321 aa14.86□□□□□ -0.03
SF3B1-204ENST00000414963 PSTPIP1O43586 416 aa14.86□□□□□ -0.03
SF3B1-204ENST00000414963 NCK2O43639 380 aa14.86□□□□□ -0.03
SF3B1-204ENST00000414963 TRUB2O95900 331 aaKnown RBP14.86□□□□□ -0.03
SF3B1-204ENST00000414963 PFKLP17858 780 aa14.86□□□□□ -0.03
SF3B1-204ENST00000414963 MIPP30301 263 aa14.86□□□□□ -0.03
SF3B1-204ENST00000414963 CDC25CP30307 473 aa14.86□□□□□ -0.03
SF3B1-204ENST00000414963 GBP1P32455 592 aa14.86□□□□□ -0.03
SF3B1-204ENST00000414963 RDXP35241 583 aaKnown RBP14.86□□□□□ -0.03
SF3B1-204ENST00000414963 SULT1E1P49888 294 aa14.86□□□□□ -0.03
SF3B1-204ENST00000414963 PEX5P50542 639 aa14.86□□□□□ -0.03
SF3B1-204ENST00000414963 TAS2R40P59535 323 aa14.86□□□□□ -0.03
SF3B1-204ENST00000414963 PITX1P78337 314 aaPredicted RBP14.86□□□□□ -0.03
SF3B1-204ENST00000414963 ATP11AP98196 1134 aa14.86□□□□□ -0.03
SF3B1-204ENST00000414963 SLC25A11Q02978 314 aaKnown RBP14.86□□□□□ -0.03
SF3B1-204ENST00000414963 NNTQ13423 1086 aa14.86□□□□□ -0.03
SF3B1-204ENST00000414963 ADAM15Q13444 863 aa14.86□□□□□ -0.03
SF3B1-204ENST00000414963 COL19A1Q14993 1142 aa14.86□□□□□ -0.03
SF3B1-204ENST00000414963 HECTD3Q5T447 861 aa14.86□□□□□ -0.03
SF3B1-204ENST00000414963 GPR153Q6NV75 609 aa14.86□□□□□ -0.03
SF3B1-204ENST00000414963 GAREM2Q75VX8 874 aa14.86□□□□□ -0.03
SF3B1-204ENST00000414963 POLNQ7Z5Q5 900 aa14.86□□□□□ -0.03
SF3B1-204ENST00000414963 RHOT1Q8IXI2 618 aa14.86□□□□□ -0.03
SF3B1-204ENST00000414963 HS6ST3Q8IZP7 471 aa14.86□□□□□ -0.03
SF3B1-204ENST00000414963 SFXN1Q9H9B4 322 aa14.86□□□□□ -0.03
SF3B1-204ENST00000414963 ASAH2Q9NR71 780 aa14.86□□□□□ -0.03
SF3B1-204ENST00000414963 CALCOCO1Q9P1Z2 691 aa14.86□□□□□ -0.03
SF3B1-204ENST00000414963 DNMT3BQ9UBC3 853 aaKnown RBP14.86□□□□□ -0.03
SF3B1-204ENST00000414963 USTQ9Y2C2 406 aa14.86□□□□□ -0.03
SF3B1-204ENST00000414963 DDX3YO15523 660 aaKnown RBP14.85□□□□□ -0.03
SF3B1-204ENST00000414963 TLR5O60602 858 aa14.85□□□□□ -0.03
SF3B1-204ENST00000414963 GLP2RO95838 553 aa14.85□□□□□ -0.03
SF3B1-204ENST00000414963 OAS1P00973 400 aaKnown RBP14.85□□□□□ -0.03
SF3B1-204ENST00000414963 ATP1A1P05023 1023 aaKnown RBP14.85□□□□□ -0.03
SF3B1-204ENST00000414963 SRGAP2BP0DMP2 458 aa14.85□□□□□ -0.03
SF3B1-204ENST00000414963 HOXB8P17481 243 aaPredicted RBP14.85□□□□□ -0.03
SF3B1-204ENST00000414963 GABRR2P28476 465 aa14.85□□□□□ -0.03
SF3B1-204ENST00000414963 GTF2F1P35269 517 aaKnown RBP eCLIP14.85□□□□□ -0.03
SF3B1-204ENST00000414963 CXCR3P49682 368 aa14.85□□□□□ -0.03
SF3B1-204ENST00000414963 KPNA1P52294 538 aaPredicted RBP14.85□□□□□ -0.03
SF3B1-204ENST00000414963 RBM10P98175 930 aaKnown RBP14.85□□□□□ -0.03
SF3B1-204ENST00000414963 DEUP1Q05D60 604 aa14.85□□□□□ -0.03
SF3B1-204ENST00000414963 ADGRE1Q14246 886 aa14.85□□□□□ -0.03
SF3B1-204ENST00000414963 HADHQ16836 314 aaKnown RBP14.85□□□□□ -0.03
SF3B1-204ENST00000414963 CTC1Q2NKJ3 1217 aa14.85□□□□□ -0.03
SF3B1-204ENST00000414963 BOLA3Q53S33 107 aa14.85□□□□□ -0.03
SF3B1-204ENST00000414963 ZNF697Q5TEC3 545 aa14.85□□□□□ -0.03
SF3B1-204ENST00000414963 CYP4V2Q6ZWL3 525 aaPredicted RBP14.85□□□□□ -0.03
SF3B1-204ENST00000414963 RSRC2Q7L4I2 434 aaKnown RBP14.85□□□□□ -0.03
SF3B1-204ENST00000414963 TAC4Q86UU9 113 aa14.85□□□□□ -0.03
SF3B1-204ENST00000414963 PSTKQ8IV42 348 aaKnown RBP14.85□□□□□ -0.03
SF3B1-204ENST00000414963 UBL4BQ8N7F7 174 aa14.85□□□□□ -0.03
SF3B1-204ENST00000414963 KIF18AQ8NI77 898 aa14.85□□□□□ -0.03
SF3B1-204ENST00000414963 CORO1BQ9BR76 489 aa14.85□□□□□ -0.03
SF3B1-204ENST00000414963 WDR6Q9NNW5 1121 aaKnown RBP14.85□□□□□ -0.03
SF3B1-204ENST00000414963 DDIT4Q9NX09 232 aa14.85□□□□□ -0.03
SF3B1-204ENST00000414963 DNMT3LQ9UJW3 386 aa14.85□□□□□ -0.03
SF3B1-204ENST00000414963 USP18Q9UMW8 372 aa14.85□□□□□ -0.03
SF3B1-204ENST00000414963 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.85□□□□□ -0.03
SF3B1-204ENST00000414963 ATG2AQ2TAZ0 1938 aa14.85□□□□□ -0.03
SF3B1-204ENST00000414963 ENC1O14682 589 aa14.84□□□□□ -0.03
SF3B1-204ENST00000414963 IRAK2O43187 625 aa14.84□□□□□ -0.03
SF3B1-204ENST00000414963 OLFM2O95897 454 aa14.84□□□□□ -0.03
SF3B1-204ENST00000414963 KRT7P08729 469 aa14.84□□□□□ -0.03
SF3B1-204ENST00000414963 TCF4P15884 667 aa14.84□□□□□ -0.03
SF3B1-204ENST00000414963 IL1R2P27930 398 aa14.84□□□□□ -0.03
SF3B1-204ENST00000414963 ATP5C1P36542 298 aaKnown RBP14.84□□□□□ -0.03
SF3B1-204ENST00000414963 AIF1P55008 147 aa14.84□□□□□ -0.03
SF3B1-204ENST00000414963 CDO1Q16878 200 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms