RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 AFAP1L2Q8N4X5 818 aa8.84□□□□□ -0.99
SYNE1-211ENST00000413186 DYRK4Q9NR20 520 aa8.84□□□□□ -0.99
SYNE1-211ENST00000413186 RGS18Q9NS28 235 aa8.84□□□□□ -0.99
SYNE1-211ENST00000413186 LMCD1Q9NZU5 365 aa8.84□□□□□ -0.99
SYNE1-211ENST00000413186 PCDHGC3Q9UN70 934 aa8.84□□□□□ -0.99
SYNE1-211ENST00000413186 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.84□□□□□ -0.99
SYNE1-211ENST00000413186 CAPN6Q9Y6Q1 641 aa8.84□□□□□ -0.99
SYNE1-211ENST00000413186 BTNL10A8MVZ5 291 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 O00370 1275 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 STK25O00506 426 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 ZNF197O14709 1029 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 BAIAP3O94812 1187 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 USP17L7P0C7H9 530 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 ACRP10323 421 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 IFNAR2P48551 515 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 ARSEP51690 589 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 PDE1BQ01064 536 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 TMEM63BQ5T3F8 832 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 CAPN12Q6ZSI9 719 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 MON1AQ86VX9 555 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 DDX42Q86XP3 938 aaKnown RBP eCLIP8.83□□□□□ -1
SYNE1-211ENST00000413186 LZTR1Q8N653 840 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 STK32AQ8WU08 396 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 EDEM1Q92611 657 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 FUBP3Q96I24 572 aaKnown RBP eCLIP8.83□□□□□ -1
SYNE1-211ENST00000413186 NFU1Q9UMS0 254 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 L1RE1Q9UN81 338 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 H0Y626 953 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 SLC9A3R1O14745 358 aaPredicted RBP8.83□□□□□ -1
SYNE1-211ENST00000413186 STAU1O95793 577 aaKnown RBP8.83□□□□□ -1
SYNE1-211ENST00000413186 CYP1A2P05177 515 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 TROVE2P10155 538 aaKnown RBP eCLIP8.83□□□□□ -1
SYNE1-211ENST00000413186 TSC22D1Q15714 1073 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 PPP1R26Q5T8A7 1209 aaPredicted RBP8.83□□□□□ -1
SYNE1-211ENST00000413186 TIGD7Q6NT04 549 aaPredicted RBP8.83□□□□□ -1
SYNE1-211ENST00000413186 TRIM42Q8IWZ5 723 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 ARHGAP24Q8N264 748 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 GIPC2Q8TF65 315 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 ABTB1Q969K4 478 aaPredicted RBP8.83□□□□□ -1
SYNE1-211ENST00000413186 HNRNPABQ99729 332 aaKnown RBP8.83□□□□□ -1
SYNE1-211ENST00000413186 FRMD8Q9BZ67 464 aaPredicted RBP8.83□□□□□ -1
SYNE1-211ENST00000413186 ISCUQ9H1K1 167 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 SPATS2LQ9NUQ6 558 aaKnown RBP8.83□□□□□ -1
SYNE1-211ENST00000413186 MARCH2Q9P0N8 246 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 CDY1Q9Y6F8 540 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 NR1D1P20393 614 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 MSH2P43246 934 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 LRRC38Q5VT99 294 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 LRIG3Q6UXM1 1119 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 CCNI2Q6ZMN8 369 aaPredicted RBP8.83□□□□□ -1
SYNE1-211ENST00000413186 CCDC13Q8IYE1 715 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 KLHDC9Q8NEP7 349 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 PABPC5Q96DU9 382 aaKnown RBP8.83□□□□□ -1
SYNE1-211ENST00000413186 CDHR5Q9HBB8 845 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 ADAM21Q9UKJ8 722 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 EDIL3O43854 480 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 HOXD13P35453 343 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 ZNF143P52747 638 aaPredicted RBP8.83□□□□□ -1
SYNE1-211ENST00000413186 IL9RQ01113 521 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 SLC7A5Q01650 507 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 CCDC15Q0P6D6 951 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 RAB30Q15771 203 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 VARS2Q5ST30 1063 aaKnown RBP8.83□□□□□ -1
SYNE1-211ENST00000413186 MEI1Q5TIA1 1274 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 ARHGAP17Q68EM7 881 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 KCNT2Q6UVM3 1135 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 KRT74Q7RTS7 529 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 USP13Q92995 863 aaPredicted RBP8.83□□□□□ -1
SYNE1-211ENST00000413186 BTBD6Q96KE9 485 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 SUSD3Q96L08 255 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 SLC9A7Q96T83 725 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 RNF39Q9H2S5 420 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 INTS9Q9NV88 658 aaKnown RBP8.83□□□□□ -1
SYNE1-211ENST00000413186 KLHL14Q9P2G3 628 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 DUSP10Q9Y6W6 482 aa8.83□□□□□ -1
SYNE1-211ENST00000413186 ENPP3O14638 875 aa8.82□□□□□ -1
SYNE1-211ENST00000413186 RASGRF2O14827 1237 aa8.82□□□□□ -1
SYNE1-211ENST00000413186 ZMYND10O75800 440 aa8.82□□□□□ -1
SYNE1-211ENST00000413186 NOL4O94818 638 aa8.82□□□□□ -1
SYNE1-211ENST00000413186 H2AFXP16104 143 aaPredicted RBP8.82□□□□□ -1
SYNE1-211ENST00000413186 CDC25CP30307 473 aa8.82□□□□□ -1
SYNE1-211ENST00000413186 KPNA2P52292 529 aaKnown RBP8.82□□□□□ -1
SYNE1-211ENST00000413186 RAD23BP54727 409 aa8.82□□□□□ -1
SYNE1-211ENST00000413186 GEMIN4P57678 1058 aaKnown RBP8.82□□□□□ -1
SYNE1-211ENST00000413186 IZUMO3Q5VZ72 239 aa8.82□□□□□ -1
SYNE1-211ENST00000413186 LNX1Q8TBB1 728 aaPredicted RBP8.82□□□□□ -1
SYNE1-211ENST00000413186 PDCD6IPQ8WUM4 868 aaKnown RBP8.82□□□□□ -1
SYNE1-211ENST00000413186 FGD4Q96M96 766 aa8.82□□□□□ -1
SYNE1-211ENST00000413186 BRD8Q9H0E9 1235 aa8.82□□□□□ -1
SYNE1-211ENST00000413186 POLE3Q9NRF9 147 aa8.82□□□□□ -1
SYNE1-211ENST00000413186 AMACRQ9UHK6 382 aa8.82□□□□□ -1
SYNE1-211ENST00000413186 NEMP1O14524 444 aa8.82□□□□□ -1
SYNE1-211ENST00000413186 SH3BP5O60239 455 aa8.82□□□□□ -1
SYNE1-211ENST00000413186 ITIH2P19823 946 aa8.82□□□□□ -1
SYNE1-211ENST00000413186 MMP8P22894 467 aa8.82□□□□□ -1
SYNE1-211ENST00000413186 PMLP29590 882 aa8.82□□□□□ -1
SYNE1-211ENST00000413186 LRPAP1P30533 357 aa8.82□□□□□ -1
SYNE1-211ENST00000413186 PREPLQ4J6C6 727 aaPredicted RBP8.82□□□□□ -1
SYNE1-211ENST00000413186 SDE2Q6IQ49 451 aa8.82□□□□□ -1
SYNE1-211ENST00000413186 SPOCD1Q6ZMY3 1216 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms