RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 CCPG1Q9ULG6 757 aa7.17□□□□□ -1.26
USP40-202ENST00000409945 OAZ3Q9UMX2 235 aa7.17□□□□□ -1.26
USP40-202ENST00000409945 CORO2BQ9UQ03 480 aa7.17□□□□□ -1.26
USP40-202ENST00000409945 DOCK3Q8IZD9 2030 aa7.17□□□□□ -1.26
USP40-202ENST00000409945 PLXNB2O15031 1838 aa7.17□□□□□ -1.26
USP40-202ENST00000409945 A0A0G2JMZ2 1700 aa7.17□□□□□ -1.26
USP40-202ENST00000409945 ZNF236Q9UL36 1845 aa7.17□□□□□ -1.26
USP40-202ENST00000409945 LOC100996750A0A140TA64 210 aa7.17□□□□□ -1.26
USP40-202ENST00000409945 F8W8V4 182 aa7.17□□□□□ -1.26
USP40-202ENST00000409945 KPNA5O15131 536 aa7.17□□□□□ -1.26
USP40-202ENST00000409945 GRM6O15303 877 aa7.17□□□□□ -1.26
USP40-202ENST00000409945 TPD52L2O43399 206 aaKnown RBP7.17□□□□□ -1.26
USP40-202ENST00000409945 CDC14BO60729 498 aa7.17□□□□□ -1.26
USP40-202ENST00000409945 REC8O95072 547 aa7.17□□□□□ -1.26
USP40-202ENST00000409945 ICAM1P05362 532 aa7.17□□□□□ -1.26
USP40-202ENST00000409945 PDHBP11177 359 aa7.17□□□□□ -1.26
USP40-202ENST00000409945 MCM5P33992 734 aa7.17□□□□□ -1.26
USP40-202ENST00000409945 ANP32AP39687 249 aaKnown RBP7.17□□□□□ -1.26
USP40-202ENST00000409945 NOVP48745 357 aa7.17□□□□□ -1.26
USP40-202ENST00000409945 CTXN1P60606 82 aa7.17□□□□□ -1.26
USP40-202ENST00000409945 FAM193AP78312 1265 aa7.17□□□□□ -1.26
USP40-202ENST00000409945 KRT32Q14532 448 aa7.17□□□□□ -1.26
USP40-202ENST00000409945 WTAPQ15007 396 aa7.17□□□□□ -1.26
USP40-202ENST00000409945 PPP4R3AQ6IN85 833 aa7.17□□□□□ -1.26
USP40-202ENST00000409945 CCDC174Q6PII3 467 aa7.17□□□□□ -1.26
USP40-202ENST00000409945 FAM180AQ6UWF9 173 aa7.17□□□□□ -1.26
USP40-202ENST00000409945 SYNE3Q6ZMZ3 975 aa7.17□□□□□ -1.26
USP40-202ENST00000409945 ANKS1AQ92625 1134 aa7.17□□□□□ -1.26
USP40-202ENST00000409945 RABGGTAQ92696 567 aa7.17□□□□□ -1.26
USP40-202ENST00000409945 KRTAP4-6Q9BYQ5 205 aa7.17□□□□□ -1.26
USP40-202ENST00000409945 ADAM7Q9H2U9 754 aa7.17□□□□□ -1.26
USP40-202ENST00000409945 MRPL46Q9H2W6 279 aaKnown RBP7.17□□□□□ -1.26
USP40-202ENST00000409945 RNF146Q9NTX7 359 aa7.17□□□□□ -1.26
USP40-202ENST00000409945 TMEM140Q9NV12 185 aa7.17□□□□□ -1.26
USP40-202ENST00000409945 PNPOQ9NVS9 261 aa7.17□□□□□ -1.26
USP40-202ENST00000409945 FBXO34Q9NWN3 711 aa7.17□□□□□ -1.26
USP40-202ENST00000409945 CPNE7Q9UBL6 633 aa7.17□□□□□ -1.26
USP40-202ENST00000409945 ADD3Q9UEY8 706 aaKnown RBP7.17□□□□□ -1.26
USP40-202ENST00000409945 HTTP42858 3142 aa7.16□□□□□ -1.26
USP40-202ENST00000409945 CCDC69A6NI79 296 aa7.16□□□□□ -1.26
USP40-202ENST00000409945 ASB14A6NK59 587 aa7.16□□□□□ -1.26
USP40-202ENST00000409945 KBTBD13C9JR72 458 aa7.16□□□□□ -1.26
USP40-202ENST00000409945 E7EWF7 191 aa7.16□□□□□ -1.26
USP40-202ENST00000409945 TBX3O15119 743 aa7.16□□□□□ -1.26
USP40-202ENST00000409945 SLC16A6O15403 523 aa7.16□□□□□ -1.26
USP40-202ENST00000409945 MATN4O95460 622 aa7.16□□□□□ -1.26
USP40-202ENST00000409945 LDHAP00338 332 aaKnown RBP7.16□□□□□ -1.26
USP40-202ENST00000409945 CYP21A2P08686 494 aa7.16□□□□□ -1.26
USP40-202ENST00000409945 KIF5BP33176 963 aa7.16□□□□□ -1.26
USP40-202ENST00000409945 GZMKP49863 264 aa7.16□□□□□ -1.26
USP40-202ENST00000409945 GJA9P57773 515 aa7.16□□□□□ -1.26
USP40-202ENST00000409945 ZNF543Q08ER8 600 aa7.16□□□□□ -1.26
USP40-202ENST00000409945 CCL14Q16627 93 aa7.16□□□□□ -1.26
USP40-202ENST00000409945 MAP3K21Q5TCX8 1036 aa7.16□□□□□ -1.26
USP40-202ENST00000409945 DARS2Q6PI48 645 aaKnown RBP7.16□□□□□ -1.26
USP40-202ENST00000409945 RNF169Q8NCN4 708 aa7.16□□□□□ -1.26
USP40-202ENST00000409945 CYFIP2Q96F07 1278 aa7.16□□□□□ -1.26
USP40-202ENST00000409945 IL17RAQ96F46 866 aa7.16□□□□□ -1.26
USP40-202ENST00000409945 MRI1Q9BV20 369 aa7.16□□□□□ -1.26
USP40-202ENST00000409945 MAF1Q9H063 256 aa7.16□□□□□ -1.26
USP40-202ENST00000409945 C12orf65Q9H3J6 166 aaKnown RBP7.16□□□□□ -1.26
USP40-202ENST00000409945 SLAMF7Q9NQ25 335 aa7.16□□□□□ -1.26
USP40-202ENST00000409945 COL11A1P12107 1806 aaPredicted RBP7.16□□□□□ -1.26
USP40-202ENST00000409945 RLFQ13129 1914 aa7.16□□□□□ -1.26
USP40-202ENST00000409945 CENPFP49454 3210 aa7.15□□□□□ -1.26
USP40-202ENST00000409945 PARP14Q460N5 1801 aa7.15□□□□□ -1.26
USP40-202ENST00000409945 A0A1W2PRX2 142 aa7.15□□□□□ -1.26
USP40-202ENST00000409945 SEPT4O43236 478 aa7.15□□□□□ -1.26
USP40-202ENST00000409945 PRSS23O95084 383 aa7.15□□□□□ -1.26
USP40-202ENST00000409945 CALM1P0DP23 149 aa7.15□□□□□ -1.26
USP40-202ENST00000409945 CALM2P0DP24 149 aa7.15□□□□□ -1.26
USP40-202ENST00000409945 CALM3P0DP25 149 aa7.15□□□□□ -1.26
USP40-202ENST00000409945 RARBP10826 455 aa7.15□□□□□ -1.26
USP40-202ENST00000409945 KCNC1P48547 511 aa7.15□□□□□ -1.26
USP40-202ENST00000409945 RAC3P60763 192 aa7.15□□□□□ -1.26
USP40-202ENST00000409945 PTH1RQ03431 593 aa7.15□□□□□ -1.26
USP40-202ENST00000409945 RAB39AQ14964 217 aa7.15□□□□□ -1.26
USP40-202ENST00000409945 LRRC56Q8IYG6 542 aaPredicted RBP7.15□□□□□ -1.26
USP40-202ENST00000409945 ENAHQ8N8S7 591 aaPredicted RBP7.15□□□□□ -1.26
USP40-202ENST00000409945 BHLHE22Q8NFJ8 381 aaPredicted RBP7.15□□□□□ -1.26
USP40-202ENST00000409945 CTCFLQ8NI51 663 aaPredicted RBP7.15□□□□□ -1.26
USP40-202ENST00000409945 TNPO1Q92973 898 aaKnown RBP7.15□□□□□ -1.26
USP40-202ENST00000409945 LPPQ93052 612 aa7.15□□□□□ -1.26
USP40-202ENST00000409945 ZNF700Q9H0M5 742 aa7.15□□□□□ -1.26
USP40-202ENST00000409945 RANBP17Q9H2T7 1088 aaKnown RBP7.15□□□□□ -1.26
USP40-202ENST00000409945 CAMSAP3Q9P1Y5 1249 aaPredicted RBP7.15□□□□□ -1.26
USP40-202ENST00000409945 WDR19Q8NEZ3 1342 aa7.15□□□□□ -1.26
USP40-202ENST00000409945 LOC102724159A0A0B4J2E5 919 aa7.15□□□□□ -1.27
USP40-202ENST00000409945 PGK2P07205 417 aa7.15□□□□□ -1.27
USP40-202ENST00000409945 SNHG28P0DPA3 235 aa7.15□□□□□ -1.27
USP40-202ENST00000409945 AKR1A1P14550 325 aa7.15□□□□□ -1.27
USP40-202ENST00000409945 SLC6A2P23975 617 aa7.15□□□□□ -1.27
USP40-202ENST00000409945 SLC16A2P36021 539 aa7.15□□□□□ -1.27
USP40-202ENST00000409945 GNAQP50148 359 aa7.15□□□□□ -1.27
USP40-202ENST00000409945 MRPL49Q13405 166 aaKnown RBP7.15□□□□□ -1.27
USP40-202ENST00000409945 PWP2Q15269 919 aaKnown RBP7.15□□□□□ -1.27
USP40-202ENST00000409945 LCNL1Q6ZST4 164 aa7.15□□□□□ -1.27
USP40-202ENST00000409945 SRLQ86TD4 932 aa7.15□□□□□ -1.27
USP40-202ENST00000409945 CASKIN2Q8WXE0 1202 aa7.15□□□□□ -1.27
USP40-202ENST00000409945 ARPC5LQ9BPX5 153 aa7.15□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms