RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 EFCAB1Q9HAE3 211 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 TCRBV7S2A1N4TA0A589 114 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 ZSCAN9O15535 394 aaPredicted RBP11.09□□□□□ -0.63
CCDC40-204ENST00000397545 GH1P01241 217 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 SPATA31C1P0DKV0 1188 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 MTFR1Q15390 333 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 CCDC85BQ15834 202 aaPredicted RBP11.09□□□□□ -0.63
CCDC40-204ENST00000397545 FAM83EQ2M2I3 478 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 NAPEPLDQ6IQ20 393 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 KCNV1Q6PIU1 500 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 POLNQ7Z5Q5 900 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 TMPRSS6Q8IU80 811 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 SPATA2LQ8IUW3 424 aaPredicted RBP11.09□□□□□ -0.63
CCDC40-204ENST00000397545 TTC30BQ8N4P2 665 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 MSL3Q8N5Y2 521 aaKnown RBP11.09□□□□□ -0.63
CCDC40-204ENST00000397545 GMCL1P1Q8NEA9 526 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 PYDC1Q8WXC3 89 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 USP6NLQ92738 828 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 OXNAD1Q96HP4 312 aaPredicted RBP11.09□□□□□ -0.63
CCDC40-204ENST00000397545 L3MBTL3Q96JM7 780 aaPredicted RBP11.09□□□□□ -0.63
CCDC40-204ENST00000397545 FAM237BA0A1B0GVD1 139 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 TM9SF1O15321 606 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 TSPAN3O60637 253 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 CLPTM1O96005 669 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 PROCP04070 461 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 THRAP10827 490 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 MUTP22033 750 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 AMPD1P23109 780 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 CRADDP78560 199 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 TBL3Q12788 808 aaKnown RBP11.09□□□□□ -0.63
CCDC40-204ENST00000397545 PREPLQ4J6C6 727 aaPredicted RBP11.09□□□□□ -0.63
CCDC40-204ENST00000397545 XRRA1Q6P2D8 792 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 MPZL3Q6UWV2 235 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 ZNF662Q6ZS27 426 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 COLGALT1Q8NBJ5 622 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 TMEM176AQ96HP8 235 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 WDR18Q9BV38 432 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 RNPEPL1Q9HAU8 725 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 DDX18Q9NVP1 670 aaKnown RBP11.09□□□□□ -0.63
CCDC40-204ENST00000397545 ADAMTSL1Q8N6G6 1762 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 MYO1GB0I1T2 1018 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 FAM200BP0CF97 657 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 RBL1P28749 1068 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 MLH1P40692 756 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 FMO1Q01740 532 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 MPP3Q13368 585 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 PTK6Q13882 451 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 PGM5Q15124 567 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 OASLQ15646 514 aaKnown RBP11.09□□□□□ -0.63
CCDC40-204ENST00000397545 TRMT5Q32P41 509 aaKnown RBP11.09□□□□□ -0.63
CCDC40-204ENST00000397545 SEL1L3Q68CR1 1132 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 BNC2Q6ZN30 1099 aaPredicted RBP11.09□□□□□ -0.63
CCDC40-204ENST00000397545 LRRC74BQ6ZQY2 392 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 YTHDF3Q7Z739 585 aaKnown RBP11.09□□□□□ -0.63
CCDC40-204ENST00000397545 FBXO16Q8IX29 292 aaPredicted RBP11.09□□□□□ -0.63
CCDC40-204ENST00000397545 EFCAB3Q8N7B9 438 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 SH3GL2Q99962 352 aa11.09□□□□□ -0.63
CCDC40-204ENST00000397545 DDX50Q9BQ39 737 aaKnown RBP11.09□□□□□ -0.63
CCDC40-204ENST00000397545 TBC1D12O60347 775 aa11.08□□□□□ -0.64
CCDC40-204ENST00000397545 NOL4O94818 638 aa11.08□□□□□ -0.64
CCDC40-204ENST00000397545 CYP2F1P24903 491 aa11.08□□□□□ -0.64
CCDC40-204ENST00000397545 PDPK2PQ6A1A2 396 aa11.08□□□□□ -0.64
CCDC40-204ENST00000397545 ADAM32Q8TC27 787 aa11.08□□□□□ -0.64
CCDC40-204ENST00000397545 BLOC1S5Q8TDH9 187 aa11.08□□□□□ -0.64
CCDC40-204ENST00000397545 CELF6Q96J87 481 aaKnown RBP11.08□□□□□ -0.64
CCDC40-204ENST00000397545 VPS50Q96JG6 964 aa11.08□□□□□ -0.64
CCDC40-204ENST00000397545 ATXN3LQ9H3M9 355 aa11.08□□□□□ -0.64
CCDC40-204ENST00000397545 WDCPQ9H6R7 721 aa11.08□□□□□ -0.64
CCDC40-204ENST00000397545 DDX28Q9NUL7 540 aaKnown RBP11.08□□□□□ -0.64
CCDC40-204ENST00000397545 DCDC2Q9UHG0 476 aa11.08□□□□□ -0.64
CCDC40-204ENST00000397545 TSPAN16Q9UKR8 245 aa11.08□□□□□ -0.64
CCDC40-204ENST00000397545 LRCH1Q9Y2L9 728 aa11.08□□□□□ -0.64
CCDC40-204ENST00000397545 UNC5CO95185 931 aa11.08□□□□□ -0.64
CCDC40-204ENST00000397545 VIL1P09327 827 aaKnown RBP11.08□□□□□ -0.64
CCDC40-204ENST00000397545 ACADSBP45954 432 aa11.08□□□□□ -0.64
CCDC40-204ENST00000397545 RECQLP46063 649 aaPredicted RBP11.08□□□□□ -0.64
CCDC40-204ENST00000397545 NDST1P52848 882 aa11.08□□□□□ -0.64
CCDC40-204ENST00000397545 STX5Q13190 355 aa11.08□□□□□ -0.64
CCDC40-204ENST00000397545 EIF1ADQ8N9N8 165 aaKnown RBP11.08□□□□□ -0.64
CCDC40-204ENST00000397545 CATSPER2Q96P56 530 aa11.08□□□□□ -0.64
CCDC40-204ENST00000397545 SYT17Q9BSW7 474 aa11.08□□□□□ -0.64
CCDC40-204ENST00000397545 ZNF518BQ9C0D4 1074 aa11.08□□□□□ -0.64
CCDC40-204ENST00000397545 WDR27A2RRH5 827 aa11.08□□□□□ -0.64
CCDC40-204ENST00000397545 NCF1BA6NI72 391 aaPredicted RBP11.08□□□□□ -0.64
CCDC40-204ENST00000397545 NCF1CA8MVU1 366 aaPredicted RBP11.08□□□□□ -0.64
CCDC40-204ENST00000397545 KDM1AO60341 852 aa11.08□□□□□ -0.64
CCDC40-204ENST00000397545 ZMPSTE24O75844 475 aa11.08□□□□□ -0.64
CCDC40-204ENST00000397545 NCF1P14598 390 aaPredicted RBP11.08□□□□□ -0.64
CCDC40-204ENST00000397545 CHRM3P20309 590 aa11.08□□□□□ -0.64
CCDC40-204ENST00000397545 TNFRSF8P28908 595 aa11.08□□□□□ -0.64
CCDC40-204ENST00000397545 KYAT1Q16773 422 aa11.08□□□□□ -0.64
CCDC40-204ENST00000397545 C15orf59Q2T9L4 293 aaPredicted RBP11.08□□□□□ -0.64
CCDC40-204ENST00000397545 NBPF20Q3BBV1 942 aa11.08□□□□□ -0.64
CCDC40-204ENST00000397545 AGKQ53H12 422 aa11.08□□□□□ -0.64
CCDC40-204ENST00000397545 NPNTQ6UXI9 565 aa11.08□□□□□ -0.64
CCDC40-204ENST00000397545 SETD3Q86TU7 594 aaPredicted RBP11.08□□□□□ -0.64
CCDC40-204ENST00000397545 ZCCHC9Q8N567 271 aaKnown RBP11.08□□□□□ -0.64
CCDC40-204ENST00000397545 PHF21BQ96EK2 531 aa11.08□□□□□ -0.64
CCDC40-204ENST00000397545 LRRC40Q9H9A6 602 aa11.08□□□□□ -0.64
CCDC40-204ENST00000397545 FBXO6Q9NRD1 293 aaPredicted RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms