RNA–Protein interactions for RNA: ENST00000391814.5

SHANK1-204, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHANK1, Length 6,622 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-204ENST00000391814 PARP8Q8N3A8 854 aa16.62■□□□□ 0.25
SHANK1-204ENST00000391814 NSUN6Q8TEA1 469 aaKnown RBP16.62■□□□□ 0.25
SHANK1-204ENST00000391814 SPASTQ9UBP0 616 aa16.62■□□□□ 0.25
SHANK1-204ENST00000391814 PNMA8CA0A1B0GUJ8 204 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 ME2P23368 584 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 CASP4P49662 377 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 PRMT9Q6P2P2 845 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 SLC44A2Q8IWA5 706 aaPredicted RBP16.61■□□□□ 0.25
SHANK1-204ENST00000391814 CACTIN-AS1Q8N1I8 211 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 TPRKBQ9Y3C4 175 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 TULP2O00295 520 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 SLC26A4O43511 780 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 ITGA9Q13797 1035 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 CSHL1Q14406 222 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 TMEM132DQ14C87 1099 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 LINC00523Q86TU6 105 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 GPATCH2LQ9NWQ4 482 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 TRNAU1APQ9NX07 287 aaKnown RBP16.61■□□□□ 0.25
SHANK1-204ENST00000391814 TUBGCP4Q9UGJ1 667 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 LDLRP01130 860 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 TNFRSF8P28908 595 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 STIP1P31948 543 aaKnown RBP16.61■□□□□ 0.25
SHANK1-204ENST00000391814 TNIP3Q96KP6 325 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 SPATA33Q96N06 139 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 OLFM1Q99784 485 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 DPYSL4O14531 572 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 DCXO43602 365 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 SNX3O60493 162 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 ALADP13716 330 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 HPCAP84074 193 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 TTI2Q6NXR4 508 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 CKAP2Q8WWK9 683 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 TPD52L3Q96J77 140 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 NUDT12Q9BQG2 462 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 RUSC1Q9BVN2 902 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 LRMDAQ9H2I8 198 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 NMRK1Q9NWW6 199 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 SRP68Q9UHB9 627 aaKnown RBP16.61■□□□□ 0.25
SHANK1-204ENST00000391814 SLC30A1Q9Y6M5 507 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 UBAP2LQ14157 1087 aaKnown RBP16.61■□□□□ 0.25
SHANK1-204ENST00000391814 DHDDSQ86SQ9 333 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 STK32CQ86UX6 486 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 EPHX4Q8IUS5 362 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 VPS37AQ8NEZ2 397 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 FAM45AQ8TCE6 357 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 KAT2BQ92831 832 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 RAD18Q9NS91 495 aa16.61■□□□□ 0.25
SHANK1-204ENST00000391814 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.61■□□□□ 0.25
SHANK1-204ENST00000391814 SERPINE1P05121 402 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 IL6P05231 212 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 SRPK1Q96SB4 655 aaKnown RBP16.6■□□□□ 0.25
SHANK1-204ENST00000391814 TRIM62Q9BVG3 475 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 TMCC3Q9ULS5 477 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 BTBD3Q9Y2F9 522 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 PCDHA10Q9Y5I2 948 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 NCAPD2Q15021 1401 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 FAM237BA0A1B0GVD1 139 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 CBFA2T3O75081 653 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 ZMPSTE24O75844 475 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 ASMTLO95671 621 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 ARHGEF19Q8IW93 802 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.6■□□□□ 0.25
SHANK1-204ENST00000391814 ZNF560Q96MR9 790 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 NRDE2Q9H7Z3 1164 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.6■□□□□ 0.25
SHANK1-204ENST00000391814 F5H6K3 240 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 CES2O00748 559 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 TIMM44O43615 452 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 KLRC3Q07444 240 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 ALFQ53S48 1182 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 CCDC157Q569K6 752 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 TTC27Q6P3X3 843 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 EPB41L1Q9H4G0 881 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 KLHL1Q9NR64 748 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 GTF2A1LQ9UNN4 478 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 LOC100506127A0A0U1RQW1 187 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 SLC37A4O43826 429 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 CCNG2Q16589 344 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 ERO1BQ86YB8 467 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 WDR36Q8NI36 951 aaKnown RBP16.6■□□□□ 0.25
SHANK1-204ENST00000391814 SCFD2Q8WU76 684 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 TRMT6Q9UJA5 497 aaKnown RBP16.6■□□□□ 0.25
SHANK1-204ENST00000391814 TELO2Q9Y4R8 837 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 ZFYVE16Q7Z3T8 1539 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 SAMD9LQ8IVG5 1584 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 KIAA0391O15091 583 aaKnown RBP16.6■□□□□ 0.25
SHANK1-204ENST00000391814 CYP11B1P15538 503 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 TOB1P50616 345 aaPredicted RBP16.6■□□□□ 0.25
SHANK1-204ENST00000391814 SRP54P61011 504 aaKnown RBP16.6■□□□□ 0.25
SHANK1-204ENST00000391814 CUL2Q13617 745 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 TSNQ15631 228 aaKnown RBP16.6■□□□□ 0.25
SHANK1-204ENST00000391814 CCDC153Q494R4 210 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 CD302Q8IX05 232 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 FOPNLQ96NB1 174 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 RNF146Q9NTX7 359 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 CDC42BPGQ6DT37 1551 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 WDR27A2RRH5 827 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 CCDC154A6NI56 674 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 PMPCBO75439 489 aa16.6■□□□□ 0.25
SHANK1-204ENST00000391814 RGS4P49798 205 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms