RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 NCKIPSDQ9NZQ3 722 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 PLA2G4CQ9UP65 541 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 ZNF609O15014 1411 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 USP42Q9H9J4 1324 aaKnown RBP13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 A0A0G2JLW4 131 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 GYPCP04921 128 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 SVOPQ8N4V2 548 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 FAM120BQ96EK7 910 aaKnown RBP13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 MED8Q96G25 268 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 ERGIC2Q96RQ1 377 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 FICDQ9BVA6 458 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 RNPEPQ9H4A4 650 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 USP18Q9UMW8 372 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 H3BMM5 538 aa13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 ICAM1P05362 532 aa13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 TNNI3P19429 210 aa13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 PTPN3P26045 913 aa13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 NME5P56597 212 aa13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 STX4Q12846 297 aa13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 PDPK2PQ6A1A2 396 aa13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 MACC1Q6ZN28 852 aa13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 TLK2Q86UE8 772 aa13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 COMMD2Q86X83 199 aa13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 GJD4Q96KN9 370 aaPredicted RBP13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 YME1L1Q96TA2 773 aa13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 CLEC4MQ9H2X3 399 aaPredicted RBP13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 MRPL39Q9NYK5 338 aaKnown RBP13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 TSC22D2O75157 780 aa13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 PDE5AO76074 875 aa13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 B3GAT3O94766 335 aa13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 ACO1P21399 889 aaKnown RBP13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 CLEC17AQ6ZS10 378 aa13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 PABPC3Q9H361 631 aaKnown RBP13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 PXDNLA1KZ92 1463 aa13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 CKMP06732 381 aa13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 NQO1P15559 274 aaKnown RBP13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 GRK2P25098 689 aa13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 CSNK2BP67870 215 aa13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 FAM98BQ52LJ0 330 aaKnown RBP13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 EID3Q8N140 333 aa13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 RMND5BQ96G75 393 aaPredicted RBP13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 IRX2Q9BZI1 471 aaPredicted RBP13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 ZMYND8Q9ULU4 1186 aaPredicted RBP13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 CNTNAP5Q8WYK1 1306 aa13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 FAM20BO75063 409 aa13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 TRIM28Q13263 835 aaKnown RBP13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 CTXN3Q4LDR2 81 aa13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 PDZK1Q5T2W1 519 aa13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 SNX30Q5VWJ9 437 aa13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 CASP12Q6UXS9 341 aa13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 ATG9AQ7Z3C6 839 aa13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 NBPF15Q8N660 670 aa13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 TC2NQ8N9U0 490 aa13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 MAGEB10Q96LZ2 347 aaPredicted RBP13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 LSM8O95777 96 aaKnown RBP13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 IFNGR2P38484 337 aa13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 EN1Q05925 392 aaPredicted RBP13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 STOX1Q6ZVD7 989 aa13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 MTMR12Q9C0I1 747 aa13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 OSGEPL1Q9H4B0 414 aa13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 THG1LQ9NWX6 298 aaKnown RBP13.15□□□□□ -0.3
CCDC88C-204ENST00000389857 SF3B1O75533 1304 aaKnown RBP eCLIP13.15□□□□□ -0.34e-6■■■■■ 117
CCDC88C-204ENST00000389857 PIPSLA2A3N6 862 aa13.15□□□□□ -0.31
CCDC88C-204ENST00000389857 RPN2P04844 631 aa13.15□□□□□ -0.31
CCDC88C-204ENST00000389857 FAXCQ5TGI0 409 aa13.15□□□□□ -0.31
CCDC88C-204ENST00000389857 FAM172AQ8WUF8 416 aa13.15□□□□□ -0.31
CCDC88C-204ENST00000389857 USP7Q93009 1102 aa13.15□□□□□ -0.31
CCDC88C-204ENST00000389857 MBD5Q9P267 1494 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 PEX1O43933 1283 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 ITGAXP20702 1163 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 PON1P27169 355 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 VAC14Q08AM6 782 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 MTM1Q13496 603 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 GNA13Q14344 377 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 NAA30Q147X3 362 aaPredicted RBP13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 ACOT1Q86TX2 421 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 GPAMQ9HCL2 828 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 CYP4F12Q9HCS2 524 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 ZNF862O60290 1169 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 CAPN1P07384 714 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 PIK3R1P27986 724 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 OVGP1Q12889 678 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 STARD3Q14849 445 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 POMGNT2Q8NAT1 580 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 VPS51Q9UID3 782 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 DUSP12Q9UNI6 340 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 O00370 1275 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 GLRBP48167 497 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 CCDC153Q494R4 210 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 EPC2Q52LR7 807 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 GJB7Q6PEY0 223 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 PLA2R1Q13018 1463 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 IQGAP3Q86VI3 1631 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 THP07101 528 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 ZNF24P17028 368 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 CYP11B2P19099 503 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 DSG3P32926 999 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 PRKAA2P54646 552 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 MIB1Q86YT6 1006 aa13.14□□□□□ -0.31
CCDC88C-204ENST00000389857 RNASE11Q8TAA1 199 aaKnown RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms