RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 CTNNA1P35221 906 aaKnown RBP10.68□□□□□ -0.7
VPS53-202ENST00000389040 NSFP46459 744 aaKnown RBP10.68□□□□□ -0.7
VPS53-202ENST00000389040 PEX5P50542 639 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 SNX16P57768 344 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 CENPCQ03188 943 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 CBX2Q14781 532 aaPredicted RBP10.68□□□□□ -0.7
VPS53-202ENST00000389040 TAF12Q16514 161 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 FAM153CQ494X1 144 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 RARS2Q5T160 578 aaKnown RBP10.68□□□□□ -0.7
VPS53-202ENST00000389040 NAA35Q5VZE5 725 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 ALS2CLQ60I27 953 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 TMC5Q6UXY8 1006 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 DENND5BQ6ZUT9 1274 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 DNAJB7Q7Z6W7 309 aaPredicted RBP10.68□□□□□ -0.7
VPS53-202ENST00000389040 MCOLN2Q8IZK6 566 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 TSEN2Q8NCE0 465 aaKnown RBP10.68□□□□□ -0.7
VPS53-202ENST00000389040 OVCA2Q8WZ82 227 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 EXOC4Q96A65 974 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 BTBD6Q96KE9 485 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 LHX5Q9H2C1 402 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 CRISPLD1Q9H336 500 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 CYLDQ9NQC7 956 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 FAM153AQ9UHL3 310 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 PCDHGC3Q9UN70 934 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 CCDC66A2RUB6 948 aa10.67□□□□□ -0.7
VPS53-202ENST00000389040 MBTPS2O43462 519 aa10.67□□□□□ -0.7
VPS53-202ENST00000389040 AP1G2O75843 785 aa10.67□□□□□ -0.7
VPS53-202ENST00000389040 CD19P15391 556 aa10.67□□□□□ -0.7
VPS53-202ENST00000389040 CTNNA2P26232 953 aa10.67□□□□□ -0.7
VPS53-202ENST00000389040 PPP1R26Q5T8A7 1209 aaPredicted RBP10.67□□□□□ -0.7
VPS53-202ENST00000389040 TRIM72Q6ZMU5 477 aa10.67□□□□□ -0.7
VPS53-202ENST00000389040 NUP93Q8N1F7 819 aa10.67□□□□□ -0.7
VPS53-202ENST00000389040 MREGQ8N565 214 aa10.67□□□□□ -0.7
VPS53-202ENST00000389040 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.67□□□□□ -0.7
VPS53-202ENST00000389040 ZNF606Q8WXB4 792 aa10.67□□□□□ -0.7
VPS53-202ENST00000389040 CPA5Q8WXQ8 436 aa10.67□□□□□ -0.7
VPS53-202ENST00000389040 HSFY1Q96LI6 401 aa10.67□□□□□ -0.7
VPS53-202ENST00000389040 TTLL2Q9BWV7 592 aa10.67□□□□□ -0.7
VPS53-202ENST00000389040 ZNF518BQ9C0D4 1074 aa10.67□□□□□ -0.7
VPS53-202ENST00000389040 ASAH2Q9NR71 780 aa10.67□□□□□ -0.7
VPS53-202ENST00000389040 KRT82Q9NSB4 513 aa10.67□□□□□ -0.7
VPS53-202ENST00000389040 GDE1Q9NZC3 331 aa10.67□□□□□ -0.7
VPS53-202ENST00000389040 IL37Q9NZH6 218 aa10.67□□□□□ -0.7
VPS53-202ENST00000389040 ZKSCAN7Q9P0L1 754 aaPredicted RBP10.67□□□□□ -0.7
VPS53-202ENST00000389040 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.67□□□□□ -0.7
VPS53-202ENST00000389040 NR2E1Q9Y466 385 aa10.67□□□□□ -0.7
VPS53-202ENST00000389040 FAM92AA1XBS5 289 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 F8VP50 259 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 H3BQ06 376 aaPredicted RBP10.66□□□□□ -0.7
VPS53-202ENST00000389040 XPO1O14980 1071 aaKnown RBP10.66□□□□□ -0.7
VPS53-202ENST00000389040 TTI1O43156 1089 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 HSF2BPO75031 334 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 CCDC130P13994 396 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 ATF6P18850 670 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 RRM1P23921 792 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 DDX6P26196 483 aaKnown RBP eCLIP10.66□□□□□ -0.7
VPS53-202ENST00000389040 ECHS1P30084 290 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 CDC25CP30307 473 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 BST2Q10589 180 aaKnown RBP10.66□□□□□ -0.7
VPS53-202ENST00000389040 HLTFQ14527 1009 aaKnown RBP eCLIP10.66□□□□□ -0.7
VPS53-202ENST00000389040 SEL1L2Q5TEA6 688 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 PTCRAQ6ISU1 281 aaPredicted RBP10.66□□□□□ -0.7
VPS53-202ENST00000389040 PPP1R2P3Q6NXS1 205 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 OTOP3Q7RTS5 596 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 ADAT2Q7Z6V5 191 aaKnown RBP10.66□□□□□ -0.7
VPS53-202ENST00000389040 SCML4Q8N228 414 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 PDZD8Q8NEN9 1154 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 KCTD13Q8WZ19 329 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 ASB2Q96Q27 587 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 PHF7Q9BWX1 381 aaPredicted RBP10.66□□□□□ -0.7
VPS53-202ENST00000389040 FAM49BQ9NUQ9 324 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 PSD3Q9NYI0 1048 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 ANAPC7Q9UJX3 599 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 TSPAN16Q9UKR8 245 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 USP15Q9Y4E8 981 aaPredicted RBP10.66□□□□□ -0.7
VPS53-202ENST00000389040 CEP83Q9Y592 693 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 PCDHA3Q9Y5H8 950 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 TNFRSF10BO14763 440 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 CCL16O15467 120 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 RHOP08100 348 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 WEE1P30291 646 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 ACADSBP45954 432 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 PSEN1P49768 467 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 DR1Q01658 176 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 DDR2Q16832 855 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 PKDCCQ504Y2 493 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 AADACL2Q6P093 401 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 CLEC20AQ6ZU45 233 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 PDZD4Q76G19 769 aaPredicted RBP10.66□□□□□ -0.7
VPS53-202ENST00000389040 MON1BQ7L1V2 547 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 CPNE8Q86YQ8 564 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 SCN4BQ8IWT1 228 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 TTC9BQ8N6N2 239 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 GOLGA6L1Q8N7Z2 621 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 C12orf76Q8N812 135 aaPredicted RBP10.66□□□□□ -0.7
VPS53-202ENST00000389040 SLC35F5Q8WV83 523 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 SEC14L1Q92503 715 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 SLITRK1Q96PX8 696 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 GCNAQ96QF7 691 aa10.66□□□□□ -0.7
VPS53-202ENST00000389040 RUFY1Q96T51 708 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms