RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 HMGCRP04035 888 aa11.24□□□□□ -0.61
NEDD9-201ENST00000379433 PFKMP08237 780 aa11.24□□□□□ -0.61
NEDD9-201ENST00000379433 HOXD10P28358 340 aa11.24□□□□□ -0.61
NEDD9-201ENST00000379433 HOXD11P31277 338 aaPredicted RBP11.24□□□□□ -0.61
NEDD9-201ENST00000379433 BRCC3P46736 316 aa11.24□□□□□ -0.61
NEDD9-201ENST00000379433 CLUL1Q15846 466 aa11.24□□□□□ -0.61
NEDD9-201ENST00000379433 SMUG1Q53HV7 270 aa11.24□□□□□ -0.61
NEDD9-201ENST00000379433 ANKRD22Q5VYY1 191 aa11.24□□□□□ -0.61
NEDD9-201ENST00000379433 ZNF449Q6P9G9 518 aa11.24□□□□□ -0.61
NEDD9-201ENST00000379433 SRLQ86TD4 932 aa11.24□□□□□ -0.61
NEDD9-201ENST00000379433 SMG8Q8ND04 991 aaKnown RBP11.24□□□□□ -0.61
NEDD9-201ENST00000379433 GSDMBQ8TAX9 411 aa11.24□□□□□ -0.61
NEDD9-201ENST00000379433 EZH1Q92800 747 aaPredicted RBP11.24□□□□□ -0.61
NEDD9-201ENST00000379433 ART4Q93070 314 aa11.24□□□□□ -0.61
NEDD9-201ENST00000379433 CCDC68Q9H2F9 335 aa11.24□□□□□ -0.61
NEDD9-201ENST00000379433 KIF9Q9HAQ2 790 aa11.24□□□□□ -0.61
NEDD9-201ENST00000379433 ZNF304Q9HCX3 659 aa11.24□□□□□ -0.61
NEDD9-201ENST00000379433 TTLL3Q9Y4R7 772 aa11.24□□□□□ -0.61
NEDD9-201ENST00000379433 MYO7AQ13402 2215 aa11.24□□□□□ -0.61
NEDD9-201ENST00000379433 TCRBV7S3A2A0A539 114 aa11.24□□□□□ -0.61
NEDD9-201ENST00000379433 VIMP08670 466 aaKnown RBP11.24□□□□□ -0.61
NEDD9-201ENST00000379433 KRT7P08729 469 aa11.24□□□□□ -0.61
NEDD9-201ENST00000379433 ZNF16P17020 682 aaPredicted RBP11.24□□□□□ -0.61
NEDD9-201ENST00000379433 CTCFP49711 727 aaPredicted RBP11.24□□□□□ -0.61
NEDD9-201ENST00000379433 SLC25A11Q02978 314 aaKnown RBP11.24□□□□□ -0.61
NEDD9-201ENST00000379433 CACNB2Q08289 660 aaPredicted RBP11.24□□□□□ -0.61
NEDD9-201ENST00000379433 SFSWAPQ12872 951 aaKnown RBP11.24□□□□□ -0.61
NEDD9-201ENST00000379433 GRIK3Q13003 919 aa11.24□□□□□ -0.61
NEDD9-201ENST00000379433 PTGISQ16647 500 aa11.24□□□□□ -0.61
NEDD9-201ENST00000379433 NANOGNBQ7Z5D8 188 aa11.24□□□□□ -0.61
NEDD9-201ENST00000379433 MREGQ8N565 214 aa11.24□□□□□ -0.61
NEDD9-201ENST00000379433 B4GALNT2Q8NHY0 566 aa11.24□□□□□ -0.61
NEDD9-201ENST00000379433 MAIP1Q8WWC4 291 aa11.24□□□□□ -0.61
NEDD9-201ENST00000379433 P3H4Q92791 437 aa11.24□□□□□ -0.61
NEDD9-201ENST00000379433 RNF186Q9NXI6 227 aa11.24□□□□□ -0.61
NEDD9-201ENST00000379433 COL1A2P08123 1366 aa11.23□□□□□ -0.61
NEDD9-201ENST00000379433 A0A0G2JMZ2 1700 aa11.23□□□□□ -0.61
NEDD9-201ENST00000379433 KCNN4O15554 427 aa11.23□□□□□ -0.61
NEDD9-201ENST00000379433 ELF1P32519 619 aa11.23□□□□□ -0.61
NEDD9-201ENST00000379433 ARPP19P56211 112 aa11.23□□□□□ -0.61
NEDD9-201ENST00000379433 LAMB3Q13751 1172 aa11.23□□□□□ -0.61
NEDD9-201ENST00000379433 CCDC14Q49A88 953 aa11.23□□□□□ -0.61
NEDD9-201ENST00000379433 CPLX4Q7Z7G2 160 aa11.23□□□□□ -0.61
NEDD9-201ENST00000379433 OSTM1Q86WC4 334 aa11.23□□□□□ -0.61
NEDD9-201ENST00000379433 PPM1EQ8WY54 764 aa11.23□□□□□ -0.61
NEDD9-201ENST00000379433 TRIM56Q9BRZ2 755 aaKnown RBP11.23□□□□□ -0.61
NEDD9-201ENST00000379433 CYP3A43Q9HB55 503 aa11.23□□□□□ -0.61
NEDD9-201ENST00000379433 LRRC4Q9HBW1 653 aa11.23□□□□□ -0.61
NEDD9-201ENST00000379433 DDX43Q9NXZ2 648 aaKnown RBP11.23□□□□□ -0.61
NEDD9-201ENST00000379433 ATP8B3O60423 1300 aa11.23□□□□□ -0.61
NEDD9-201ENST00000379433 MCF2LO15068 1137 aa11.23□□□□□ -0.61
NEDD9-201ENST00000379433 EIF3HO15372 352 aaKnown RBP eCLIP11.23□□□□□ -0.61
NEDD9-201ENST00000379433 RNASEH2AO75792 299 aaKnown RBP11.23□□□□□ -0.61
NEDD9-201ENST00000379433 GABBR2O75899 941 aa11.23□□□□□ -0.61
NEDD9-201ENST00000379433 S100BP04271 92 aaPredicted RBP11.23□□□□□ -0.61
NEDD9-201ENST00000379433 GNAT1P11488 350 aa11.23□□□□□ -0.61
NEDD9-201ENST00000379433 CHN1P15882 459 aa11.23□□□□□ -0.61
NEDD9-201ENST00000379433 SSTR1P30872 391 aa11.23□□□□□ -0.61
NEDD9-201ENST00000379433 MDH1P40925 334 aaKnown RBP11.23□□□□□ -0.61
NEDD9-201ENST00000379433 FCGRTP55899 365 aa11.23□□□□□ -0.61
NEDD9-201ENST00000379433 PPP2R2AP63151 447 aa11.23□□□□□ -0.61
NEDD9-201ENST00000379433 PIGZQ86VD9 579 aa11.23□□□□□ -0.61
NEDD9-201ENST00000379433 TRIM4Q9C037 500 aa11.23□□□□□ -0.61
NEDD9-201ENST00000379433 PRG3Q9Y2Y8 225 aaPredicted RBP11.23□□□□□ -0.61
NEDD9-201ENST00000379433 TCRBV5S1A1TA0A578 114 aa11.22□□□□□ -0.61
NEDD9-201ENST00000379433 MYBPHLA2RUH7 354 aa11.22□□□□□ -0.61
NEDD9-201ENST00000379433 PTGESO14684 152 aa11.22□□□□□ -0.61
NEDD9-201ENST00000379433 TP73O15350 636 aa11.22□□□□□ -0.61
NEDD9-201ENST00000379433 TRUB2O95900 331 aaKnown RBP11.22□□□□□ -0.61
NEDD9-201ENST00000379433 CHRNA1P02708 482 aa11.22□□□□□ -0.61
NEDD9-201ENST00000379433 RARGP13631 454 aa11.22□□□□□ -0.61
NEDD9-201ENST00000379433 KRT15P19012 456 aa11.22□□□□□ -0.61
NEDD9-201ENST00000379433 ITIH2P19823 946 aa11.22□□□□□ -0.61
NEDD9-201ENST00000379433 IVDP26440 423 aa11.22□□□□□ -0.61
NEDD9-201ENST00000379433 TCEAL1Q15170 157 aa11.22□□□□□ -0.61
NEDD9-201ENST00000379433 CYP1B1Q16678 543 aa11.22□□□□□ -0.61
NEDD9-201ENST00000379433 PPP1R15BQ5SWA1 713 aa11.22□□□□□ -0.61
NEDD9-201ENST00000379433 UBXN11Q5T124 520 aa11.22□□□□□ -0.61
NEDD9-201ENST00000379433 LCLAT1Q6UWP7 414 aa11.22□□□□□ -0.61
NEDD9-201ENST00000379433 C4orf33Q8N1A6 199 aa11.22□□□□□ -0.61
NEDD9-201ENST00000379433 CCNYQ8ND76 341 aa11.22□□□□□ -0.61
NEDD9-201ENST00000379433 C3orf58Q8NDZ4 430 aa11.22□□□□□ -0.61
NEDD9-201ENST00000379433 CCDC110Q8TBZ0 833 aa11.22□□□□□ -0.61
NEDD9-201ENST00000379433 GIPC2Q8TF65 315 aa11.22□□□□□ -0.61
NEDD9-201ENST00000379433 ARHGEF2Q92974 986 aaKnown RBP11.22□□□□□ -0.61
NEDD9-201ENST00000379433 PRMT1Q99873 361 aaKnown RBP11.22□□□□□ -0.61
NEDD9-201ENST00000379433 ADAM2Q99965 735 aa11.22□□□□□ -0.61
NEDD9-201ENST00000379433 LHX5Q9H2C1 402 aa11.22□□□□□ -0.61
NEDD9-201ENST00000379433 KRT82Q9NSB4 513 aa11.22□□□□□ -0.61
NEDD9-201ENST00000379433 FAM105AQ9NUU6 356 aa11.22□□□□□ -0.61
NEDD9-201ENST00000379433 C5orf42Q9H799 3197 aa11.22□□□□□ -0.61
NEDD9-201ENST00000379433 EXOC1LA0A1B0GW35 172 aa11.22□□□□□ -0.61
NEDD9-201ENST00000379433 MAGEA4P43358 317 aa11.22□□□□□ -0.61
NEDD9-201ENST00000379433 CRYBB1P53674 252 aaPredicted RBP11.22□□□□□ -0.61
NEDD9-201ENST00000379433 ZNF268Q14587 947 aaPredicted RBP11.22□□□□□ -0.61
NEDD9-201ENST00000379433 EFTUD2Q15029 972 aaKnown RBP eCLIP11.22□□□□□ -0.61
NEDD9-201ENST00000379433 EGFLAMQ63HQ2 1017 aa11.22□□□□□ -0.61
NEDD9-201ENST00000379433 UNC5DQ6UXZ4 953 aa11.22□□□□□ -0.61
NEDD9-201ENST00000379433 HFE2Q6ZVN8 426 aa11.22□□□□□ -0.61
NEDD9-201ENST00000379433 CEP57Q86XR8 500 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms