RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 BST2Q10589 180 aaKnown RBP11.95□□□□□ -0.5
VPS13A-205ENST00000376636 SLC30A5Q8TAD4 765 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 DLG3Q92796 817 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 PABPC3Q9H361 631 aaKnown RBP11.95□□□□□ -0.5
VPS13A-205ENST00000376636 UBP1Q9NZI7 540 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 SWSAP1Q6NVH7 229 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 FIG4Q92562 907 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 PDGFCQ9NRA1 345 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 PCDHB2Q9Y5E7 798 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 SEMA3DO95025 777 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 AQP5P55064 265 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 GALNT3Q14435 633 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 NSMCE2Q96MF7 247 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 RIBC2Q9H4K1 309 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 PRODHO43272 600 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 RAD51CO43502 376 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 TPBGLP0DKB5 382 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 AVPR1AP37288 418 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 GSTM5P46439 218 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 RALGDSQ12967 914 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 ATP13A5Q4VNC0 1218 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 GANQ9H2C0 597 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.95□□□□□ -0.5
VPS13A-205ENST00000376636 ABCC10Q5T3U5 1492 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 UBDO15205 165 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 ADCY6O43306 1168 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 USP17L8P0C7I0 530 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 TUBA4AP68366 448 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 SNRNP35Q16560 246 aaKnown RBP11.95□□□□□ -0.5
VPS13A-205ENST00000376636 CXXC5Q7LFL8 322 aaKnown RBP11.95□□□□□ -0.5
VPS13A-205ENST00000376636 DEFB107AQ8IZN7 70 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 SIX5Q8N196 739 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 CAMKK1Q8N5S9 505 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 FAM71DQ8N9W8 422 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 ARHGAP28Q9P2N2 729 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 NCAM1P13591 858 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 DDX39BQ13838 428 aaKnown RBP11.95□□□□□ -0.5
VPS13A-205ENST00000376636 EIF3MQ7L2H7 374 aaKnown RBP11.95□□□□□ -0.5
VPS13A-205ENST00000376636 GATAD2AQ86YP4 633 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 POP5Q969H6 163 aaKnown RBP11.95□□□□□ -0.5
VPS13A-205ENST00000376636 COX4I2Q96KJ9 171 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 DCUN1D5Q9BTE7 237 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.95□□□□□ -0.5
VPS13A-205ENST00000376636 IFRD1O00458 451 aaPredicted RBP11.95□□□□□ -0.5
VPS13A-205ENST00000376636 CAPGP40121 348 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 PRKAA2P54646 552 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 DYNLL1P63167 89 aaKnown RBP11.95□□□□□ -0.5
VPS13A-205ENST00000376636 ITGADQ13349 1161 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 TOP3AQ13472 1001 aaPredicted RBP11.95□□□□□ -0.5
VPS13A-205ENST00000376636 PCDHA10Q9Y5I2 948 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 LOC100506127A0A0U1RQW1 187 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 HS6ST1O60243 411 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 RTN3O95197 1032 aaPredicted RBP11.95□□□□□ -0.5
VPS13A-205ENST00000376636 IL6STP40189 918 aaPredicted RBP11.95□□□□□ -0.5
VPS13A-205ENST00000376636 BIKQ13323 160 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 PLCL1Q15111 1095 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 MSANTD1Q6ZTZ1 278 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 DHFR2Q86XF0 187 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 GDPD5Q8WTR4 605 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 TSPOAP1O95153 1857 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 FMR1NBQ8N0W7 255 aaPredicted RBP11.94□□□□□ -0.5
VPS13A-205ENST00000376636 PLA2G6O60733 806 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 HSD17B3P37058 310 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 WASHC2DQ5SRD0 308 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 KBTBD8Q8NFY9 601 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 ZIM3Q96PE6 472 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 WDR12Q9GZL7 423 aaKnown RBP11.94□□□□□ -0.5
VPS13A-205ENST00000376636 TCF7L2Q9NQB0 619 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 CORO2BQ9UQ03 480 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 CHKBQ9Y259 395 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 RFX7Q2KHR2 1363 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 HIST1H2ABP04908 130 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 HIST3H2AQ7L7L0 130 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 SYN2Q92777 582 aaPredicted RBP11.94□□□□□ -0.5
VPS13A-205ENST00000376636 HIST1H2ACQ93077 130 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 PLEKHG2Q9H7P9 1386 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 PLEKHA8P1O95397 391 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 PRG2P13727 222 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 GALCP54803 685 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 GPRC5DQ9NZD1 345 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 A0A088AWK7 358 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 C15orf38-AP3S2A0A0A6YYH1 394 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 NCF1BA6NI72 391 aaPredicted RBP11.94□□□□□ -0.5
VPS13A-205ENST00000376636 NCF1CA8MVU1 366 aaPredicted RBP11.94□□□□□ -0.5
VPS13A-205ENST00000376636 HLA-DQA2P01906 255 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 NCF1P14598 390 aaPredicted RBP11.94□□□□□ -0.5
VPS13A-205ENST00000376636 ZNF10P21506 573 aaPredicted RBP11.94□□□□□ -0.5
VPS13A-205ENST00000376636 SKIV2LQ15477 1246 aaKnown RBP11.94□□□□□ -0.5
VPS13A-205ENST00000376636 ARPINQ7Z6K5 226 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 MYDGFQ969H8 173 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 GSDMCQ9BYG8 508 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 ADAM33Q9BZ11 813 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 PUS7LQ9H0K6 701 aaKnown RBP11.94□□□□□ -0.5
VPS13A-205ENST00000376636 NECAB2Q7Z6G3 386 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 AKAP14Q86UN6 197 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 SPPL2AQ8TCT8 520 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 ACTRT2Q8TDY3 377 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 NUDT5Q9UKK9 219 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 BAIAP2Q9UQB8 552 aa11.94□□□□□ -0.5
VPS13A-205ENST00000376636 A0A1B0GTH6 734 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms