RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 HMX2A2RU54 273 aa14.19□□□□□ -0.14
USP49-201ENST00000373006 BPGMP07738 259 aa14.19□□□□□ -0.14
USP49-201ENST00000373006 NR3C2P08235 984 aa14.19□□□□□ -0.14
USP49-201ENST00000373006 KCNA4P22459 653 aa14.19□□□□□ -0.14
USP49-201ENST00000373006 BTKQ06187 659 aa14.19□□□□□ -0.14
USP49-201ENST00000373006 HPS6Q86YV9 775 aa14.19□□□□□ -0.14
USP49-201ENST00000373006 KLHL4Q9C0H6 718 aa14.19□□□□□ -0.14
USP49-201ENST00000373006 SUDS3Q9H7L9 328 aaPredicted RBP14.19□□□□□ -0.14
USP49-201ENST00000373006 GPAMQ9HCL2 828 aa14.19□□□□□ -0.14
USP49-201ENST00000373006 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.19□□□□□ -0.14
USP49-201ENST00000373006 USP18Q9UMW8 372 aa14.19□□□□□ -0.14
USP49-201ENST00000373006 STYXL1Q9Y6J8 313 aa14.19□□□□□ -0.14
USP49-201ENST00000373006 PSAPP07602 524 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 TSHRP16473 764 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 INHBCP55103 352 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 CDH8P55286 799 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 RPL10AP62906 217 aaKnown RBP14.18□□□□□ -0.14
USP49-201ENST00000373006 TFAMQ00059 246 aaKnown RBP14.18□□□□□ -0.14
USP49-201ENST00000373006 CCNIQ14094 377 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 CDO1Q16878 200 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 LGSNQ5TDP6 509 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 VWA5B1Q5TIE3 1220 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 CAND1Q86VP6 1230 aaKnown RBP14.18□□□□□ -0.14
USP49-201ENST00000373006 UNC5BQ8IZJ1 945 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 UBR7Q8N806 425 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 STKLD1Q8NE28 680 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 NAT14Q8WUY8 206 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 WNK4Q96J92 1243 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 ZNF778Q96MU6 729 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 PDGFDQ9GZP0 370 aaPredicted RBP14.18□□□□□ -0.14
USP49-201ENST00000373006 SLC17A6Q9P2U8 582 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 F5H423 210 aaPredicted RBP14.18□□□□□ -0.14
USP49-201ENST00000373006 ZSCAN9O15535 394 aaPredicted RBP14.18□□□□□ -0.14
USP49-201ENST00000373006 UQCRBP14927 111 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 ACTR2P61160 394 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 OSTNP61366 133 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 FKBP1AP62942 108 aaKnown RBP14.18□□□□□ -0.14
USP49-201ENST00000373006 EN1Q05925 392 aaPredicted RBP14.18□□□□□ -0.14
USP49-201ENST00000373006 LSAMPQ13449 338 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 GRAMD1BQ3KR37 738 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 FASTKD1Q53R41 847 aaKnown RBP14.18□□□□□ -0.14
USP49-201ENST00000373006 SPATA24Q86W54 205 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 ADGRF2Q8IZF7 708 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 NCSTNQ92542 709 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 PEBP4Q96S96 227 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 POPDC2Q9HBU9 364 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 DNAJB4Q9UDY4 337 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 SNNO75324 88 aaPredicted RBP14.18□□□□□ -0.14
USP49-201ENST00000373006 RGS20O76081 388 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 OSBPP22059 807 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 RBL1P28749 1068 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 TGFB2P61812 414 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 MAP3K10Q02779 954 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 ENPEPQ07075 957 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 TRPC3Q13507 836 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 RABGAP1LQ5R372 815 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 SLFN12LQ6IEE8 588 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 KYAT3Q6YP21 454 aaKnown RBP14.18□□□□□ -0.14
USP49-201ENST00000373006 UNC5AQ6ZN44 842 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 NCAPG2Q86XI2 1143 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 MPP5Q8N3R9 675 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 ERLEC1Q96DZ1 483 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 GCNAQ96QF7 691 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 YIPF2Q9BWQ6 316 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 ZNF518BQ9C0D4 1074 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 C1orf21Q9H246 121 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 SLC38A10Q9HBR0 1119 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 JPH1Q9HDC5 661 aaPredicted RBP14.18□□□□□ -0.14
USP49-201ENST00000373006 COMMD3-BMI1R4GMX3 469 aa14.18□□□□□ -0.14
USP49-201ENST00000373006 E2F8A0AVK6 867 aa14.17□□□□□ -0.14
USP49-201ENST00000373006 MAGEB3O15480 346 aa14.17□□□□□ -0.14
USP49-201ENST00000373006 GRAP2O75791 330 aa14.17□□□□□ -0.14
USP49-201ENST00000373006 KRT38O76015 456 aa14.17□□□□□ -0.14
USP49-201ENST00000373006 LDHAP00338 332 aaKnown RBP14.17□□□□□ -0.14
USP49-201ENST00000373006 ERBB2P04626 1255 aa14.17□□□□□ -0.14
USP49-201ENST00000373006 NCF2P19878 526 aaPredicted RBP14.17□□□□□ -0.14
USP49-201ENST00000373006 POLR2BP30876 1174 aaKnown RBP14.17□□□□□ -0.14
USP49-201ENST00000373006 HNRNPDQ14103 355 aaKnown RBP14.17□□□□□ -0.14
USP49-201ENST00000373006 PDK3Q15120 406 aa14.17□□□□□ -0.14
USP49-201ENST00000373006 VSIG10LQ86VR7 867 aa14.17□□□□□ -0.14
USP49-201ENST00000373006 WDR75Q8IWA0 830 aaKnown RBP14.17□□□□□ -0.14
USP49-201ENST00000373006 CMASQ8NFW8 434 aaPredicted RBP14.17□□□□□ -0.14
USP49-201ENST00000373006 OLFM3Q96PB7 478 aa14.17□□□□□ -0.14
USP49-201ENST00000373006 PLEKHG4BQ96PX9 1271 aa14.17□□□□□ -0.14
USP49-201ENST00000373006 HAPLN3Q96S86 360 aa14.17□□□□□ -0.14
USP49-201ENST00000373006 NIF3L1Q9GZT8 377 aa14.17□□□□□ -0.14
USP49-201ENST00000373006 APOBEC2Q9Y235 224 aaKnown RBP14.17□□□□□ -0.14
USP49-201ENST00000373006 SPAG6O75602 509 aa14.17□□□□□ -0.14
USP49-201ENST00000373006 TRUB2O95900 331 aaKnown RBP14.17□□□□□ -0.14
USP49-201ENST00000373006 RAG1P15918 1043 aa14.17□□□□□ -0.14
USP49-201ENST00000373006 KCNA2P16389 499 aa14.17□□□□□ -0.14
USP49-201ENST00000373006 GMPRP36959 345 aa14.17□□□□□ -0.14
USP49-201ENST00000373006 TAZQ16635 292 aa14.17□□□□□ -0.14
USP49-201ENST00000373006 FBXL19Q6PCT2 694 aa14.17□□□□□ -0.14
USP49-201ENST00000373006 ATG14Q6ZNE5 492 aa14.17□□□□□ -0.14
USP49-201ENST00000373006 DEFB107AQ8IZN7 70 aa14.17□□□□□ -0.14
USP49-201ENST00000373006 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.17□□□□□ -0.14
USP49-201ENST00000373006 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.17□□□□□ -0.14
USP49-201ENST00000373006 FRMD8P1Q9BZ68 369 aaPredicted RBP14.17□□□□□ -0.14
USP49-201ENST00000373006 USP29Q9HBJ7 922 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms