RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 UTP20O75691 2785 aaKnown RBP9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 KNTC1P50748 2209 aa9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 F8VP50 259 aa9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 ERVH48-1M5A8F1 160 aa9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 RRP8O43159 456 aaKnown RBP9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 PCDHGA12O60330 932 aa9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 BRINP1O60477 761 aa9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 HUS1O60921 280 aa9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 PLA2G4BP0C869 781 aa9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 MBL2P11226 248 aaPredicted RBP9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 JUPP14923 745 aa9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 PDE6CP51160 858 aa9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 NOP14P78316 857 aaKnown RBP9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 MYL7Q01449 175 aa9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 KCNH2Q12809 1159 aa9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 ORC2Q13416 577 aaPredicted RBP9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 SF3A1Q15459 793 aaKnown RBP9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 SHBQ15464 509 aa9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 ZRSR1Q15695 479 aaKnown RBP9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 TAF1BQ53T94 588 aaPredicted RBP9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 PRAMEF14Q5SWL7 426 aa9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 HYIQ5T013 277 aa9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 GRAMD4Q6IC98 578 aa9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 IL27RAQ6UWB1 636 aa9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 CACUL1Q86Y37 369 aa9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 GATAD2AQ86YP4 633 aa9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 TTC9Q92623 222 aa9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 PCED1BQ96HM7 432 aa9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 SYT15Q9BQS2 421 aa9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 ORAI3Q9BRQ5 295 aa9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 C6orf106Q9H6K1 298 aaPredicted RBP9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 GDAP2Q9NXN4 497 aa9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 MAGEC2Q9UBF1 373 aaPredicted RBP9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 ANKRD6Q9Y2G4 727 aa9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 SNX9Q9Y5X1 595 aa9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 STON1Q9Y6Q2 735 aa9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 TEP1Q99973 2627 aaKnown RBP9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 PTPRJQ12913 1337 aa9.03□□□□□ -0.96
HMGB1P39-201ENST00000366304 LRRK2Q5S007 2527 aa9.02□□□□□ -0.96
HMGB1P39-201ENST00000366304 BOD1L1Q8NFC6 3051 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 TCHHQ07283 1943 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 NEDD8-MDP1E9PL57 170 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 K7ENM7 598 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 CACNG3O60359 315 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 REC8O95072 547 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 IGLV3-19P01714 112 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 PDGFRBP09619 1106 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 IRF1P10914 325 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 IL12RB1P42701 662 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 GRK6P43250 576 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 ACADVLP49748 655 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 ZNF131P52739 623 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 COPAP53621 1224 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 TFAMQ00059 246 aaKnown RBP9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 CYP27A1Q02318 531 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 KCNA1Q09470 495 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 COLEC12Q5KU26 742 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 C6orf118Q5T5N4 469 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 HES3Q5TGS1 186 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 KRT79Q5XKE5 535 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 BTBD8Q5XKL5 378 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 ADALQ6DHV7 355 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 FBXL19Q6PCT2 694 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 FAM124AQ86V42 546 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 TMEM86AQ8N2M4 240 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 SCAMP5Q8TAC9 235 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 FGF11Q92914 225 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 TMEM176AQ96HP8 235 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 ZNF560Q96MR9 790 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 KIF2CQ99661 725 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 TRIM4Q9C037 500 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 NRSN2Q9GZP1 204 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 TM9SF3Q9HD45 589 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 TBC1D14Q9P2M4 693 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 FTSJ1Q9UET6 329 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 AGO2Q9UKV8 859 aaKnown RBP9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 PCDHGC3Q9UN70 934 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 TMEM131Q92545 1883 aa9.02□□□□□ -0.97
HMGB1P39-201ENST00000366304 CLDN5O00501 218 aa9.01□□□□□ -0.97
HMGB1P39-201ENST00000366304 SLC28A2O43868 658 aa9.01□□□□□ -0.97
HMGB1P39-201ENST00000366304 C6P13671 934 aa9.01□□□□□ -0.97
HMGB1P39-201ENST00000366304 TYRP14679 529 aa9.01□□□□□ -0.97
HMGB1P39-201ENST00000366304 ACSL1P33121 698 aa9.01□□□□□ -0.97
HMGB1P39-201ENST00000366304 PNPLA4P41247 253 aa9.01□□□□□ -0.97
HMGB1P39-201ENST00000366304 CTSKP43235 329 aa9.01□□□□□ -0.97
HMGB1P39-201ENST00000366304 AFF3P51826 1226 aaKnown RBP9.01□□□□□ -0.97
HMGB1P39-201ENST00000366304 GTF2BQ00403 316 aa9.01□□□□□ -0.97
HMGB1P39-201ENST00000366304 IFRD2Q12894 506 aaPredicted RBP9.01□□□□□ -0.97
HMGB1P39-201ENST00000366304 ENPP2Q13822 863 aa9.01□□□□□ -0.97
HMGB1P39-201ENST00000366304 TRIM29Q14134 588 aa9.01□□□□□ -0.97
HMGB1P39-201ENST00000366304 SUZ12Q15022 739 aaKnown RBP9.01□□□□□ -0.97
HMGB1P39-201ENST00000366304 TMEM119Q4V9L6 283 aa9.01□□□□□ -0.97
HMGB1P39-201ENST00000366304 PKDCCQ504Y2 493 aa9.01□□□□□ -0.97
HMGB1P39-201ENST00000366304 MDH1BQ5I0G3 518 aa9.01□□□□□ -0.97
HMGB1P39-201ENST00000366304 ARHGAP40Q5TG30 622 aa9.01□□□□□ -0.97
HMGB1P39-201ENST00000366304 SDE2Q6IQ49 451 aa9.01□□□□□ -0.97
HMGB1P39-201ENST00000366304 VSTM1Q6UX27 236 aa9.01□□□□□ -0.97
HMGB1P39-201ENST00000366304 TPGS1Q6ZTW0 290 aa9.01□□□□□ -0.97
HMGB1P39-201ENST00000366304 TMPRSS6Q8IU80 811 aa9.01□□□□□ -0.97
HMGB1P39-201ENST00000366304 MYCT1Q8N699 235 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms