RNA–Protein interactions for RNA: ENST00000340958.3

CLDN4-201, Transcript of claudin 4, humanhuman

APPRIS P1 BASIC

Gene CLDN4, Length 1,831 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-201ENST00000340958 SLITRK6Q9H5Y7 841 aa18.07■□□□□ 0.48
CLDN4-201ENST00000340958 TARSL2A2RTX5 802 aaKnown RBP18.07■□□□□ 0.48
CLDN4-201ENST00000340958 LCHNA4D1U4 455 aa18.07■□□□□ 0.48
CLDN4-201ENST00000340958 PHF2O75151 1096 aa18.07■□□□□ 0.48
CLDN4-201ENST00000340958 ARHGEF15O94989 841 aa18.07■□□□□ 0.48
CLDN4-201ENST00000340958 RTN3O95197 1032 aaPredicted RBP18.07■□□□□ 0.48
CLDN4-201ENST00000340958 TUBBP07437 444 aa18.07■□□□□ 0.48
CLDN4-201ENST00000340958 CHRNA3P32297 505 aa18.07■□□□□ 0.48
CLDN4-201ENST00000340958 TUFMP49411 452 aaKnown RBP18.07■□□□□ 0.48
CLDN4-201ENST00000340958 FAM131BQ86XD5 332 aa18.07■□□□□ 0.48
CLDN4-201ENST00000340958 RFX6Q8HWS3 928 aa18.07■□□□□ 0.48
CLDN4-201ENST00000340958 TRAF3IP1Q8TDR0 691 aaPredicted RBP18.07■□□□□ 0.48
CLDN4-201ENST00000340958 RNF139Q8WU17 664 aa18.07■□□□□ 0.48
CLDN4-201ENST00000340958 RNF34Q969K3 372 aa18.07■□□□□ 0.48
CLDN4-201ENST00000340958 NPY6RQ99463 290 aa18.07■□□□□ 0.48
CLDN4-201ENST00000340958 CLSTN3Q9BQT9 956 aa18.07■□□□□ 0.48
CLDN4-201ENST00000340958 C11orf84Q9BUA3 381 aaPredicted RBP18.07■□□□□ 0.48
CLDN4-201ENST00000340958 ABCC13Q9NSE7 274 aa18.07■□□□□ 0.48
CLDN4-201ENST00000340958 AMACRQ9UHK6 382 aa18.07■□□□□ 0.48
CLDN4-201ENST00000340958 YWHAQP27348 245 aa18.06■□□□□ 0.48
CLDN4-201ENST00000340958 GBP1P32455 592 aa18.06■□□□□ 0.48
CLDN4-201ENST00000340958 ELF1P32519 619 aa18.06■□□□□ 0.48
CLDN4-201ENST00000340958 CDKN2BP42772 138 aa18.06■□□□□ 0.48
CLDN4-201ENST00000340958 DYNLT1P63172 113 aa18.06■□□□□ 0.48
CLDN4-201ENST00000340958 PDK2Q15119 407 aa18.06■□□□□ 0.48
CLDN4-201ENST00000340958 PPP6R3Q5H9R7 873 aaPredicted RBP18.06■□□□□ 0.48
CLDN4-201ENST00000340958 CCDC105Q8IYK2 499 aa18.06■□□□□ 0.48
CLDN4-201ENST00000340958 ARHGAP18Q8N392 663 aa18.06■□□□□ 0.48
CLDN4-201ENST00000340958 PRELID2Q8N945 189 aa18.06■□□□□ 0.48
CLDN4-201ENST00000340958 CMASQ8NFW8 434 aaPredicted RBP18.06■□□□□ 0.48
CLDN4-201ENST00000340958 GIPC2Q8TF65 315 aa18.06■□□□□ 0.48
CLDN4-201ENST00000340958 TEKT4Q8WW24 435 aa18.06■□□□□ 0.48
CLDN4-201ENST00000340958 C1orf54Q8WWF1 131 aa18.06■□□□□ 0.48
CLDN4-201ENST00000340958 AUTS2Q8WXX7 1259 aa18.06■□□□□ 0.48
CLDN4-201ENST00000340958 FBXO32Q969P5 355 aa18.06■□□□□ 0.48
CLDN4-201ENST00000340958 HINFPQ9BQA5 517 aa18.06■□□□□ 0.48
CLDN4-201ENST00000340958 SNRNP25Q9BV90 132 aaKnown RBP18.06■□□□□ 0.48
CLDN4-201ENST00000340958 DHX35Q9H5Z1 703 aaKnown RBP18.06■□□□□ 0.48
CLDN4-201ENST00000340958 CYP4F11Q9HBI6 524 aa18.06■□□□□ 0.48
CLDN4-201ENST00000340958 HOMER3Q9NSC5 361 aa18.06■□□□□ 0.48
CLDN4-201ENST00000340958 GPATCH2LQ9NWQ4 482 aa18.06■□□□□ 0.48
CLDN4-201ENST00000340958 DDIT4Q9NX09 232 aa18.06■□□□□ 0.48
CLDN4-201ENST00000340958 AFF4Q9UHB7 1163 aaKnown RBP18.06■□□□□ 0.48
CLDN4-201ENST00000340958 SSX2IPQ9Y2D8 614 aa18.06■□□□□ 0.48
CLDN4-201ENST00000340958 NLRC5Q86WI3 1866 aa18.06■□□□□ 0.48
CLDN4-201ENST00000340958 TRANK1O15050 2925 aa18.06■□□□□ 0.48
CLDN4-201ENST00000340958 hCG_1818297A0A087WSY0 165 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 TMEM265A0A087WTH1 108 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 RAD51CO43502 376 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 ZMYND10O75800 440 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 HEXIM1O94992 359 aaKnown RBP18.05■□□□□ 0.48
CLDN4-201ENST00000340958 F9P00740 461 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 FYNP06241 537 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 CTNNB1P35222 781 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 DR1Q01658 176 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 CREMQ03060 361 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 SNX1Q13596 522 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 TAF12Q16514 161 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 PPP2R2DQ66LE6 453 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 KLHL23Q8NBE8 558 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 ZNF461Q8TAF7 563 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 SPATA17Q96L03 361 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 RUNDC3BQ96NL0 473 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 PNKPQ96T60 521 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 CRISPLD1Q9H336 500 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 ZNF576Q9H609 170 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 SLC28A3Q9HAS3 691 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.05■□□□□ 0.48
CLDN4-201ENST00000340958 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.05■□□□□ 0.481e-6■■■□□ 14.9
CLDN4-201ENST00000340958 STIM2Q9P246 746 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 MAGED2Q9UNF1 606 aaPredicted RBP18.05■□□□□ 0.48
CLDN4-201ENST00000340958 AP4E1Q9UPM8 1137 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 SCML2Q9UQR0 700 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 EYSQ5T1H1 3165 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 A0A1W2PQH9 124 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 MDM4O15151 490 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 CSPG5O95196 566 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 CD48P09326 243 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 PTPN7P35236 360 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 PITX1P78337 314 aaPredicted RBP18.05■□□□□ 0.48
CLDN4-201ENST00000340958 GUCY2DQ02846 1103 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 ARL13BQ3SXY8 428 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 ZC3H12AQ5D1E8 599 aaKnown RBP18.05■□□□□ 0.48
CLDN4-201ENST00000340958 TPGS2Q68CL5 300 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 CCDC137Q6PK04 289 aaKnown RBP18.05■□□□□ 0.48
CLDN4-201ENST00000340958 BHLHA9Q7RTU4 235 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 ANKS1BQ7Z6G8 1248 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 MON1AQ86VX9 555 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 CCDC185Q8N715 623 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 HDAC7Q8WUI4 952 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 NT5C3BQ969T7 300 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 ADAM33Q9BZ11 813 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 RASAL2Q9UJF2 1139 aa18.05■□□□□ 0.48
CLDN4-201ENST00000340958 PTPRDP23468 1912 aa18.04■□□□□ 0.48
CLDN4-201ENST00000340958 COL6A3P12111 3177 aa18.04■□□□□ 0.48
CLDN4-201ENST00000340958 PRRG1O14668 218 aa18.04■□□□□ 0.48
CLDN4-201ENST00000340958 ALDH1A3P47895 512 aa18.04■□□□□ 0.48
CLDN4-201ENST00000340958 TMC7Q7Z402 723 aa18.04■□□□□ 0.48
CLDN4-201ENST00000340958 SPRED2Q7Z698 418 aa18.04■□□□□ 0.48
CLDN4-201ENST00000340958 IFT20Q8IY31 132 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms