RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 PM20D1Q6GTS8 502 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 NPNTQ6UXI9 565 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 BNIPLQ7Z465 357 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 MAATS1Q7Z4T9 603 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 SCD5Q86SK9 330 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 RFX6Q8HWS3 928 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 IFT20Q8IY31 132 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 CCDC105Q8IYK2 499 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 RNF168Q8IYW5 571 aaPredicted RBP4.31□□□□□ -1.72
MCF2-201ENST00000338585 SLC39A11Q8N1S5 342 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 CCDC26Q8TAB7 109 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 AUTS2Q8WXX7 1259 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 NT5C3BQ969T7 300 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 YME1L1Q96TA2 773 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 SEPT5Q99719 369 aaPredicted RBP4.31□□□□□ -1.72
MCF2-201ENST00000338585 DHX35Q9H5Z1 703 aaKnown RBP4.31□□□□□ -1.72
MCF2-201ENST00000338585 NMUR1Q9HB89 426 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 PCDH18Q9HCL0 1135 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 ARFGAP3Q9NP61 516 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 OSER1Q9NX31 292 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 MTMR10Q9NXD2 777 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 PCYOX1Q9UHG3 505 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 DNPEPQ9ULA0 475 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 AP4E1Q9UPM8 1137 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 USP3Q9Y6I4 520 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 LIASO43766 372 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 TJP3O95049 919 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 MAP3K6O95382 1288 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 FGBP02675 491 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 DNAJB2P25686 324 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 L1CAMP32004 1257 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 PTPN7P35236 360 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 CETN2P41208 172 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 FNTAP49354 379 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 VPS41P49754 854 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 OTUD4Q01804 1114 aaKnown RBP4.31□□□□□ -1.72
MCF2-201ENST00000338585 ROR1Q01973 937 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 KRT17Q04695 432 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 FPGSQ05932 587 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 DEUP1Q05D60 604 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 DUSP4Q13115 394 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 GPR17Q13304 367 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 DHX34Q14147 1143 aaKnown RBP4.31□□□□□ -1.72
MCF2-201ENST00000338585 KRT81Q14533 505 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 PSMD5Q16401 504 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 CCNG2Q16589 344 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 USP41Q3LFD5 358 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 MGAT5BQ3V5L5 792 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 BOLA3Q53S33 107 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 ERMARDQ5T6L9 678 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 DUPD1Q68J44 220 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 KIAA1841Q6NSI8 718 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 BBS12Q6ZW61 710 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 ANKS3Q6ZW76 656 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 STRADAQ7RTN6 431 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 TAC4Q86UU9 113 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 CMTR2Q8IYT2 770 aaKnown RBP4.31□□□□□ -1.72
MCF2-201ENST00000338585 PQLC3Q8N755 202 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 GLIS1Q8NBF1 620 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 COLGALT1Q8NBJ5 622 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 FBXO22Q8NEZ5 403 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 PCDH19Q8TAB3 1148 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 ACTL9Q8TC94 416 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 AENQ8WTP8 325 aaKnown RBP4.31□□□□□ -1.72
MCF2-201ENST00000338585 LRRN4Q8WUT4 740 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 HNRNPLLQ8WVV9 542 aaKnown RBP4.31□□□□□ -1.72
MCF2-201ENST00000338585 TEKT4Q8WW24 435 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 FUBP3Q96I24 572 aaKnown RBP eCLIP4.31□□□□□ -1.72
MCF2-201ENST00000338585 CCDC114Q96M63 670 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 ZNF558Q96NG5 402 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 KCTD15Q96SI1 283 aaPredicted RBP4.31□□□□□ -1.72
MCF2-201ENST00000338585 CLSTN3Q9BQT9 956 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 FUT8Q9BYC5 575 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 PNPLA8Q9NP80 782 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 SLTMQ9NWH9 1034 aaKnown RBP eCLIP4.31□□□□□ -1.72
MCF2-201ENST00000338585 DDIT4Q9NX09 232 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 MTRRQ9UBK8 725 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 ZMYND8Q9ULU4 1186 aaPredicted RBP4.31□□□□□ -1.72
MCF2-201ENST00000338585 STAP1Q9ULZ2 295 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 SNX24Q9Y343 169 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 SNX10Q9Y5X0 201 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 LAMA2P24043 3122 aaKnown RBP4.31□□□□□ -1.72
MCF2-201ENST00000338585 MYO16Q9Y6X6 1858 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 A0A1W2PQH9 124 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 FAM187AA6NFU0 413 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 H7C4K7 107 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 MDM4O15151 490 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 MSI1O43347 362 aaKnown RBP4.31□□□□□ -1.72
MCF2-201ENST00000338585 ERLIN1O75477 346 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 BAIAP3O94812 1187 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 CSPG5O95196 566 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 ECEL1O95672 775 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 SOD2P04179 222 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 TUBBP07437 444 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 LINC00271P0C7V0 271 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 ZSCAN5DPP0CG00 497 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 ETS1P14921 441 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 DESP17661 470 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 ATF6P18850 670 aa4.31□□□□□ -1.72
MCF2-201ENST00000338585 MCM3P25205 808 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms