RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 COILP38432 576 aaPredicted RBP6.35□□□□□ -1.39
CSMD1-201ENST00000335551 TCHHL1Q5QJ38 904 aaPredicted RBP6.35□□□□□ -1.39
CSMD1-201ENST00000335551 DENND5AQ6IQ26 1287 aa6.35□□□□□ -1.39
CSMD1-201ENST00000335551 PGBD2Q6P3X8 592 aa6.35□□□□□ -1.39
CSMD1-201ENST00000335551 ZNF677Q86XU0 584 aa6.35□□□□□ -1.39
CSMD1-201ENST00000335551 EDC3Q96F86 508 aaKnown RBP6.35□□□□□ -1.39
CSMD1-201ENST00000335551 RAD18Q9NS91 495 aa6.35□□□□□ -1.39
CSMD1-201ENST00000335551 CDC42BPGQ6DT37 1551 aa6.35□□□□□ -1.39
CSMD1-201ENST00000335551 PDGFRBP09619 1106 aa6.35□□□□□ -1.39
CSMD1-201ENST00000335551 DPYDQ12882 1025 aa6.35□□□□□ -1.39
CSMD1-201ENST00000335551 ARHGEF7Q14155 803 aa6.35□□□□□ -1.39
CSMD1-201ENST00000335551 PDPRQ8NCN5 879 aa6.35□□□□□ -1.39
CSMD1-201ENST00000335551 CASKIN2Q8WXE0 1202 aa6.35□□□□□ -1.39
CSMD1-201ENST00000335551 ZKSCAN4Q969J2 545 aaPredicted RBP6.35□□□□□ -1.39
CSMD1-201ENST00000335551 FAM20AQ96MK3 541 aa6.35□□□□□ -1.39
CSMD1-201ENST00000335551 NUDT12Q9BQG2 462 aa6.35□□□□□ -1.39
CSMD1-201ENST00000335551 ADPRHL2Q9NX46 363 aa6.35□□□□□ -1.39
CSMD1-201ENST00000335551 AFDNP55196 1824 aaKnown RBP6.34□□□□□ -1.39
CSMD1-201ENST00000335551 CCDC154A6NI56 674 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 TEX33O43247 280 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 PSMG1O95456 288 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 CNPP09543 421 aaKnown RBP6.34□□□□□ -1.39
CSMD1-201ENST00000335551 SULT1E1P49888 294 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 CHRNDQ07001 517 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 RNF19BQ6ZMZ0 732 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 TMEM132CQ8N3T6 1108 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 POC5Q8NA72 575 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 EEF1AKMT1Q8WVE0 214 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 HPS1Q92902 700 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 CNKSR1Q969H4 720 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 MND1Q9BWT6 205 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 ZCWPW1Q9H0M4 648 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 POLR3FQ9H1D9 316 aaPredicted RBP6.34□□□□□ -1.39
CSMD1-201ENST00000335551 DYRK3O43781 588 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 TMCC2O75069 709 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 ITIH1P19827 911 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 EFNA5P52803 228 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 VBP1P61758 197 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 TWF1Q12792 350 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 SLC13A5Q86YT5 568 aaPredicted RBP6.34□□□□□ -1.39
CSMD1-201ENST00000335551 ZDHHC13Q8IUH4 622 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 SFRP1Q8N474 314 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 RIN2Q8WYP3 895 aaPredicted RBP6.34□□□□□ -1.39
CSMD1-201ENST00000335551 CHMP1AQ9HD42 196 aaPredicted RBP6.34□□□□□ -1.39
CSMD1-201ENST00000335551 CCNB1IP1Q9NPC3 277 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 UBP1Q9NZI7 540 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 TRPM5Q9NZQ8 1165 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 SNAP23O00161 211 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 SRGNP10124 158 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 HPCAL1P37235 193 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 PTGER2P43116 358 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 S100A12P80511 92 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 RAB43Q86YS6 212 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 FAM71DQ8N9W8 422 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 FIG4Q92562 907 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 ZNF669Q96BR6 464 aaPredicted RBP6.34□□□□□ -1.39
CSMD1-201ENST00000335551 PNKPQ96T60 521 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 OSBPL11Q9BXB4 747 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 RUVBL2Q9Y230 463 aaKnown RBP6.34□□□□□ -1.39
CSMD1-201ENST00000335551 ZNF804BA4D1E1 1349 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 MATN2O00339 956 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 SNX4O95219 450 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 PDE8BO95263 885 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 FMO5P49326 533 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 MTF1Q14872 753 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 PGS1Q32NB8 556 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 NEK5Q6P3R8 708 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 CDK20Q8IZL9 346 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 NOA1Q8NC60 698 aaKnown RBP6.34□□□□□ -1.39
CSMD1-201ENST00000335551 FAM172AQ8WUF8 416 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 DGCR6LQ9BY27 220 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 CCSER2Q9H7U1 834 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 L2HGDHQ9H9P8 463 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 MAP3K20Q9NYL2 800 aaKnown RBP6.34□□□□□ -1.39
CSMD1-201ENST00000335551 GPC6Q9Y625 555 aaPredicted RBP6.34□□□□□ -1.39
CSMD1-201ENST00000335551 ZBTB5O15062 677 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 ME2P23368 584 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 ITGA3P26006 1051 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 ADSSP30520 456 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 SKIV2L2P42285 1042 aaKnown RBP6.34□□□□□ -1.39
CSMD1-201ENST00000335551 ARL4DP49703 201 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 ITGA9Q13797 1035 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 ACCSLQ4AC99 568 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 RTKN2Q8IZC4 609 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 NSMCE2Q96MF7 247 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 TMEM106CQ9BVX2 250 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 ZNF408Q9H9D4 720 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 AASDHPPTQ9NRN7 309 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 ABCA8O94911 1581 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 IRGMA1A4Y4 181 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 MGAT4DA6NG13 374 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 UBDO15205 165 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 INPP4BO15327 924 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 RPS6KA5O75582 802 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 PCCAP05165 728 aaPredicted RBP6.34□□□□□ -1.39
CSMD1-201ENST00000335551 LCP1P13796 627 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 ALDH5A1P51649 535 aaPredicted RBP6.34□□□□□ -1.39
CSMD1-201ENST00000335551 AP3S2P59780 193 aa6.34□□□□□ -1.39
CSMD1-201ENST00000335551 GRSF1Q12849 480 aaKnown RBP eCLIP6.34□□□□□ -1.39
CSMD1-201ENST00000335551 PRKAA1Q13131 559 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms