RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 TMED2Q15363 201 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 TTLL9Q3SXZ7 439 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 PREPLQ4J6C6 727 aaPredicted RBP7.11□□□□□ -1.27
SF3B1-201ENST00000335508 TFB1MQ8WVM0 346 aaKnown RBP7.11□□□□□ -1.27
SF3B1-201ENST00000335508 SCYL1Q96KG9 808 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 KIF9Q9HAQ2 790 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 SDR42E2A6NKP2 422 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 LCA5LO95447 670 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 CDH17Q12864 832 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 PTPN20Q4JDL3 420 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 NPLOC4Q8TAT6 608 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 PDCD6IPQ8WUM4 868 aaKnown RBP7.1□□□□□ -1.27
SF3B1-201ENST00000335508 STMN2Q93045 179 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 NKD2Q969F2 451 aaPredicted RBP7.1□□□□□ -1.27
SF3B1-201ENST00000335508 C16orf70Q9BSU1 422 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 MBL2P11226 248 aaPredicted RBP7.1□□□□□ -1.27
SF3B1-201ENST00000335508 CDC25CP30307 473 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 HADHAP40939 763 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 CARSP49589 748 aaKnown RBP7.1□□□□□ -1.27
SF3B1-201ENST00000335508 ERMARDQ5T6L9 678 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 ZC3H3Q8IXZ2 948 aaKnown RBP7.1□□□□□ -1.27
SF3B1-201ENST00000335508 LEMD2Q8NC56 503 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 ZFP42Q96MM3 310 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 TRIM10Q9UDY6 481 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 C5P01031 1676 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 MTA2O94776 668 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 APOA4P06727 396 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 CST5P28325 142 aaPredicted RBP7.1□□□□□ -1.27
SF3B1-201ENST00000335508 CES5AQ6NT32 575 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 ZNF669Q96BR6 464 aaPredicted RBP7.1□□□□□ -1.27
SF3B1-201ENST00000335508 SHISA4Q96DD7 197 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 SNX27Q96L92 541 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 PSMC3IPQ9P2W1 217 aaPredicted RBP7.1□□□□□ -1.27
SF3B1-201ENST00000335508 DYNC1LI1Q9Y6G9 523 aaKnown RBP7.1□□□□□ -1.27
SF3B1-201ENST00000335508 RPS6KL1Q9Y6S9 549 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 ADAMTS7Q9UKP4 1686 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 CES1P23141 567 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 OR1D2P34982 312 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 TNFSF9P41273 254 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 IRX4P78413 519 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 MRPS5P82675 430 aaKnown RBP7.1□□□□□ -1.27
SF3B1-201ENST00000335508 MAMLD1Q13495 774 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 SKIV2LQ15477 1246 aaKnown RBP7.1□□□□□ -1.27
SF3B1-201ENST00000335508 TAPT1Q6NXT6 567 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 HES6Q96HZ4 224 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 FGFBP2Q9BYJ0 223 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 GDAP2Q9NXN4 497 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 CIB2O75838 187 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 RHOCP08134 193 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 RFC2P35250 354 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 ARHGEF7Q14155 803 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 TRADDQ15628 312 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 AMHR2Q16671 573 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 ACCSLQ4AC99 568 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 LMNTD2Q8IXW0 634 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 SKA2Q8WVK7 121 aaPredicted RBP7.1□□□□□ -1.27
SF3B1-201ENST00000335508 SMYD3Q9H7B4 428 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 MSRAQ9UJ68 235 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 ATP2C2O75185 946 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 ZWINTO95229 277 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 TSHRP16473 764 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 BDNFP23560 247 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 SPDYCQ5MJ68 293 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 TPGS2Q68CL5 300 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 DSG4Q86SJ6 1040 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 GANCQ8TET4 914 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 FOPNLQ96NB1 174 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 GPR88Q9GZN0 384 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 LRRC19Q9H756 370 aa7.1□□□□□ -1.27
SF3B1-201ENST00000335508 RBM22Q9NW64 420 aaKnown RBP eCLIP7.1□□□□□ -1.273e-8■■■□□ 16.5
SF3B1-201ENST00000335508 FGBP02675 491 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 SAT1P21673 171 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 TMPRSS15P98073 1019 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 SP2Q02086 613 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 INCA1Q0VD86 236 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 KCNT1Q5JUK3 1230 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 AGBL2Q5U5Z8 902 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 TMEM139Q8IV31 216 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 HERC6Q8IVU3 1022 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 SCUBE3Q8IX30 993 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 MCUQ8NE86 351 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 PPHLN1Q8NEY8 458 aaKnown RBP7.09□□□□□ -1.27
SF3B1-201ENST00000335508 SEMA4DQ92854 862 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 CEP295NLQ96MC4 621 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 C11orf84Q9BUA3 381 aaPredicted RBP7.09□□□□□ -1.27
SF3B1-201ENST00000335508 CLIC5Q9NZA1 410 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 OR12D3Q9UGF7 316 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 SUN2Q9UH99 717 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 AFF4Q9UHB7 1163 aaKnown RBP7.09□□□□□ -1.27
SF3B1-201ENST00000335508 VPS28Q9UK41 221 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 C2CD2LO14523 706 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 HDCP19113 662 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 KLRC2P26717 231 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 PPP2R2AP63151 447 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 CACNB2Q08289 660 aaPredicted RBP7.09□□□□□ -1.27
SF3B1-201ENST00000335508 XRCC4Q13426 336 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 SDE2Q6IQ49 451 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 DLK2Q6UY11 383 aa7.09□□□□□ -1.27
SF3B1-201ENST00000335508 EFL1Q7Z2Z2 1120 aaKnown RBP7.09□□□□□ -1.27
SF3B1-201ENST00000335508 CREG2Q8IUH2 290 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms